Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7465

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7464: 15832 - BLAST expressed protein [Schizophyllum commune H4-8], at 339268 to 340751 15832 mRNA_7465: 15833 - K08518 STXBP5, SRO7_77 syntaxin-binding protein 5, at 340933 to 344642 15833 mRNA_7466: 15834 - K17887 SNX25, MDM1 sorting nexin-25, at 345181 to 349645 15834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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340,802 - 0.2
340,816 - 1.3
340,832 - -0.9
340,838 - 0.7
340,839 + -0.2
340,848 + -1.0
340,850 + -0.8
340,850 + 1.8
340,859 + -1.0
340,980 - 0.6
340,988 + 0.3
340,994 + -0.4
341,006 + -0.9
341,266 - 1.5
341,285 - 1.2
341,299 + 1.3
341,433 - 15833 mRNA_7465 0.13 0.6
341,473 - 15833 mRNA_7465 0.15 0.2
341,581 + 15833 mRNA_7465 0.17 -2.6
341,749 + 15833 mRNA_7465 0.22 -0.5
342,938 + 15833 mRNA_7465 0.54 2.6
343,001 + 15833 mRNA_7465 0.56 0.2
343,163 + 15833 mRNA_7465 0.60 -0.7
343,332 - 15833 mRNA_7465 0.65 -2.0
343,786 - 15833 mRNA_7465 0.77 1.1
343,809 - 15833 mRNA_7465 0.78 1.2
343,817 + 15833 mRNA_7465 0.78 -1.1
343,958 + 15833 mRNA_7465 0.82 -2.1
344,070 - 15833 mRNA_7465 0.85 -1.2
345,168 + 0.6