Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7220

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7219: 15587 - K15053 CHMP7 charged multivesicular body protein 7, at 1158652 to 1160281 15587 mRNA_7220: 15588 - HMMPfam-zinc-RING finger domain-PF14634,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 1160377 to 1161832 15588

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,159,726 + 15587 mRNA_7219 0.66 -0.5
1,160,155 - 0.9
1,160,163 - -0.3
1,160,184 - -0.2
1,160,299 - 0.3
1,160,306 + -0.5
1,160,313 + -0.2
1,160,600 - 15588 mRNA_7220 0.15 -0.6
1,160,762 - 15588 mRNA_7220 0.26 0.0
1,161,180 - 15588 mRNA_7220 0.55 0.7
1,161,494 + 15588 mRNA_7220 0.77 -0.9
1,161,494 + 15588 mRNA_7220 0.77 -0.3
1,161,505 - 15588 mRNA_7220 0.77 1.4
1,161,776 - 0.0
1,161,795 - 0.4
1,161,802 + -0.3
1,162,388 - 0.1
1,162,543 + -0.0