Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7212

Experiments: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7211: 15579 - HMMPfam-Fungal specific transcription factor domain-PF11951,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,SUPERFAMILY--SSF57701, at 1140051 to 1142038 15579 mRNA_7212: 15580 - KOG3764 Vesicular amine transporter, at 1142497 to 1144513 15580 mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1144823 to 1146874 15581

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
1,141,522 + 15579 mRNA_7211 0.74 1.1
1,141,522 + 15579 mRNA_7211 0.74 -1.1
1,142,059 - -0.1
1,142,076 - 0.4
1,142,084 - 0.6
1,142,126 + -0.4
1,142,202 + -0.2
1,142,236 - -0.4
1,142,253 - -0.1
1,142,268 - -0.4
1,142,348 - 0.2
1,142,356 - -1.5
1,142,361 - -0.9
1,142,362 - -0.2
1,142,364 + 0.2
1,142,365 + -0.3
1,142,367 - -0.7
1,142,379 - 0.6
1,142,414 - 0.1
1,142,421 - -0.7
1,142,421 - 0.0
1,142,421 - 0.2
1,142,436 + 0.0
1,142,548 + 0.4
1,142,549 - 0.9
1,142,581 + -0.0
1,142,729 + 15580 mRNA_7212 0.12 -0.2
1,142,731 - 15580 mRNA_7212 0.12 -1.2
1,142,736 - 15580 mRNA_7212 0.12 -0.2
1,142,842 - 15580 mRNA_7212 0.17 -0.7
1,142,859 + 15580 mRNA_7212 0.18 -0.8
1,143,141 - 15580 mRNA_7212 0.32 -3.3
1,143,395 - 15580 mRNA_7212 0.45 1.5
1,143,415 - 15580 mRNA_7212 0.46 -0.7
1,144,008 + 15580 mRNA_7212 0.75 -0.2
1,144,012 - 15580 mRNA_7212 0.75 -0.1
1,144,014 + 15580 mRNA_7212 0.75 -0.6
1,144,135 - 15580 mRNA_7212 0.81 0.9
1,144,150 + 15580 mRNA_7212 0.82 -0.5
1,144,410 + 0.1
1,144,476 + 1.4
1,144,525 - 0.9
1,144,568 - -0.5
1,144,747 - 0.1
1,144,763 - 0.3
1,145,055 + 15581 mRNA_7213 0.11 0.2
1,145,206 + 15581 mRNA_7213 0.19 -0.4
1,145,471 - 15581 mRNA_7213 0.32 -0.6