Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6976

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582618 to 583763 15344 mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583790 to 584346 15345 mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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581,656 + -1.7
581,675 - 0.3
581,705 - -0.1
581,709 - -0.7
581,720 + 1.6
581,725 + -0.6
581,728 + -0.2
581,730 - 0.1
581,732 + -1.4
581,734 - -0.6
581,734 - 0.8
581,743 + 1.0
581,751 + -0.1
581,755 - 0.0
581,780 - 0.7
581,789 - 1.1
581,795 - 1.0
581,797 - -0.3
581,797 - -0.2
581,800 + 1.2
581,812 + -0.5
581,828 - -0.5
581,846 - 1.6
581,870 - 1.3
581,905 + 0.9
581,969 + -0.6
581,982 - -0.3
581,984 - -1.0
581,987 - 0.4
581,990 - -0.8
581,992 + -1.2
581,993 - -0.3
581,997 - -0.7
582,000 - 0.5
582,004 + -0.1
582,019 - 0.3
582,027 + -0.1
582,035 - -1.4
582,049 - -0.2
582,055 - -2.5
582,056 - 0.3
582,062 + -0.3
582,069 + -0.2
582,071 + 0.9
582,071 - -0.1
582,111 - -0.9
582,125 - -0.9
582,152 - 0.1
582,161 + 0.3
582,164 - 1.7
582,173 - -0.3
582,177 + 0.9
582,181 + -0.4
582,185 + 1.1
582,187 - -0.5
582,199 - -0.5
582,319 + -1.0
582,324 + -0.2
582,350 - -0.3
582,354 - 0.3
582,354 - 0.1
582,375 - -1.3
582,435 - -0.1
582,441 + -0.1
582,468 - -1.0
582,492 - -0.4
582,492 + -2.2
582,596 - 1.1
582,690 - -0.4
582,932 + 15344 mRNA_6976 0.27 0.1
582,952 + 15344 mRNA_6976 0.29 -1.1
583,366 + 15344 mRNA_6976 0.65 0.8
583,375 + 15344 mRNA_6976 0.66 1.5
583,496 + 15344 mRNA_6976 0.77 0.1
584,005 + 15345 mRNA_6977 0.39 -0.1
584,135 - 15345 mRNA_6977 0.62 0.0
584,245 + 15345 mRNA_6977 0.82 -0.5
584,388 - 1.0
584,391 - -0.7
584,392 - 0.3
584,395 - -0.3
584,399 - 0.6
584,401 - -0.0
584,406 - -1.2
584,407 + -1.1
584,411 - -0.5
584,431 + 1.1
584,441 - -0.8
584,447 - -1.2
584,448 + -0.9
584,696 - 15346 mRNA_6978 0.17 0.5
584,721 + 15346 mRNA_6978 0.19 -0.6
584,724 - 15346 mRNA_6978 0.20 1.4
584,756 - 15346 mRNA_6978 0.22 0.3