Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6968

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6967: 15335 - K19995 SCAMP secretory carrier-associated membrane protein, at 558352 to 560106 15335 mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560422 to 561850 15336 mRNA_6969: 15337 - K17261 CAP1_2, SRV2 adenylyl cyclase-associated protein, at 561995 to 564059 15337

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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559,445 + 15335 mRNA_6967 0.62 0.5
559,715 + 15335 mRNA_6967 0.78 0.8
559,982 - -0.7
560,137 + 0.0
560,142 - -1.0
560,164 + -1.5
560,224 + 0.5
560,225 + 1.0
560,226 - 0.4
560,226 - -2.0
560,227 - 0.1
560,231 + -0.6
560,233 + -0.9
560,233 + -0.9
560,234 + 0.1
560,238 - -0.4
560,238 - 0.7
560,242 + -0.1
560,244 - -1.3
560,249 + -1.7
560,262 - -0.4
560,277 - -0.5
560,304 + 0.3
560,313 + -1.2
560,316 - -0.1
560,321 - 0.2
560,321 + -0.5
560,324 + -1.0
560,330 + 0.8
560,331 - -0.2
560,333 + 0.9
560,345 - 1.1
560,346 - 0.7
560,369 + 0.5
560,371 + 0.1
560,455 + 0.6
560,476 + -0.0
560,478 - -1.2
560,486 + -1.4
560,489 - 0.2
560,501 + -0.5
560,616 - 15336 mRNA_6968 0.14 -0.3
560,629 + 15336 mRNA_6968 0.14 0.1
560,758 - 15336 mRNA_6968 0.24 -0.7
561,034 + 15336 mRNA_6968 0.43 -0.4
561,068 + 15336 mRNA_6968 0.45 0.7
561,206 - 15336 mRNA_6968 0.55 0.0
561,381 - 15336 mRNA_6968 0.67 -0.9
561,846 - 1.0