Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6905

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6904: 15272 - HMMPfam-CTLH/CRA C-terminal to LisH motif domain-PF10607,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-CT11-RanBPM-SM00757, at 395182 to 396886 15272 mRNA_6905: 15273 - K14300 NUP133 nuclear pore complex protein Nup133, at 397122 to 402305 15273 mRNA_6906: 15274 - Hypothetical Protein, at 402652 to 403078 15274 mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403238 to 404908 15275

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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396,200 + 15272 mRNA_6904 0.60 0.2
396,305 + 15272 mRNA_6904 0.66 -0.1
396,411 + 15272 mRNA_6904 0.72 0.8
396,436 + 15272 mRNA_6904 0.74 -0.2
396,855 - -3.1
396,893 - 2.1
396,903 - -0.0
396,910 + -0.7
396,917 + -0.9
396,921 - -0.2
396,928 + -0.4
396,943 - 0.4
397,050 - -2.0
397,082 + -0.8
397,203 + -0.1
397,223 + -0.3
397,773 - 15273 mRNA_6905 0.13 2.2
400,739 - 15273 mRNA_6905 0.70 1.6
400,739 + 15273 mRNA_6905 0.70 -1.3
400,742 - 15273 mRNA_6905 0.70 0.5
402,072 - -0.9
402,358 - -0.9
402,364 - 0.3
402,370 - 0.5
402,370 + -0.3
402,378 - 0.4
402,394 + 2.0
402,530 + 1.6
402,648 - -0.4
402,784 - 15274 mRNA_6906 0.31 -1.3
403,075 - 0.3
403,260 - -0.1
403,260 - -0.4