Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6860

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6859: 15227 - K16794 PAFAH1B1, LIS1 platelet-activating factor acetylhydrolase IB subunit alpha, at 297202 to 298993 15227 mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299588 to 301362 15228 mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301646 to 303773 15229

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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299,073 + -0.6
299,190 - 0.7
299,389 - 1.6
299,395 - -0.2
299,395 + -1.0
299,458 + 0.3
299,516 - 0.1
299,629 - -0.7
299,642 + -1.6
299,657 - 0.4
299,657 - -0.6
299,660 - -0.5
299,661 + -0.3
299,665 + 0.7
299,667 + -0.1
299,667 + 1.7
299,674 - -0.4
299,674 - -1.6
299,675 + 0.2
299,687 + -0.3
299,691 + -0.1
299,697 - -0.3
299,714 + -0.4
299,985 - 15228 mRNA_6860 0.22 0.0
300,114 - 15228 mRNA_6860 0.30 0.9
300,124 + 15228 mRNA_6860 0.30 0.5
300,178 + 15228 mRNA_6860 0.33 -0.2
300,556 + 15228 mRNA_6860 0.55 -0.2
300,988 - 15228 mRNA_6860 0.79 -0.3
301,033 - 15228 mRNA_6860 0.81 -0.6
301,269 + 0.0
301,297 + 0.7
301,412 + 0.4
301,422 + 0.5
301,428 - 0.1
301,545 - -0.1
301,547 + -0.3
301,556 + -0.8
301,569 - -0.1
301,570 - -0.1
301,571 - 0.7
301,583 - 0.3
301,716 + 0.2
301,719 + -0.1
301,862 + 15229 mRNA_6861 0.10 -0.2
302,042 + 15229 mRNA_6861 0.19 0.9
302,157 + 15229 mRNA_6861 0.24 -2.4