Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6836

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237797 to 238899 15204 mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239396 to 240785 15205

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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236,811 - 0.3
236,813 + 0.2
236,817 - 0.3
236,818 + -1.9
236,823 - -0.2
236,824 - -0.2
236,825 - 0.5
236,829 - -1.2
236,831 + -1.0
236,836 - -0.2
236,836 - -0.0
236,836 - 0.1
236,840 + -0.2
236,840 + -1.2
236,858 - -0.4
236,991 + 0.2
237,010 + -0.5
237,025 - -0.6
237,027 - -0.5
237,055 - 0.4
237,064 - 0.0
237,109 + 0.2
237,145 - 0.2
237,145 - 1.1
237,154 + 0.1
237,159 + 0.0
237,262 + 0.6
237,266 + -0.4
237,274 + 0.1
237,274 + 0.1
237,278 + -0.1
237,292 + 0.0
237,299 - 0.4
237,325 - -0.1
237,333 - -0.1
237,361 + 0.2
237,366 + -0.1
237,377 + 0.5
237,378 + 0.8
237,378 + 1.8
237,384 + 0.4
237,415 - 0.5
237,428 + -0.2
237,475 + -0.2
237,519 - 0.4
237,519 - -1.1
237,521 - -0.2
237,526 + -0.4
237,531 + -0.3
237,533 - -1.0
237,533 - 1.0
237,541 + 0.9
237,541 + -0.4
237,541 + -0.6
237,541 + -0.6
237,545 - -0.5
237,557 - 1.4
237,563 + -1.2
237,571 - 0.8
237,571 - 1.1
237,817 - -0.5
237,868 + 0.1
238,080 + 15204 mRNA_6836 0.26 1.4
238,426 - 15204 mRNA_6836 0.57 0.4
238,477 + 15204 mRNA_6836 0.62 0.6
238,528 - 15204 mRNA_6836 0.66 0.6
238,821 - -0.8
238,848 - 0.0
238,855 + 0.4
238,857 + 0.2
238,859 + 0.3
238,866 + -0.5
238,993 - -0.9
239,016 - 0.3
239,025 - 1.1
239,027 + -3.6
239,040 - 0.5
239,057 - 0.1
239,058 + -0.5
239,060 + 2.1
239,073 + -0.5
239,158 + -0.3
239,159 - 1.6
239,185 - -0.1
239,201 + 0.9
239,218 - -0.5
239,275 - 0.6
239,293 - 0.3
239,323 + 1.4
239,470 - 0.3
239,622 - 15205 mRNA_6837 0.16 -0.7
239,624 - 15205 mRNA_6837 0.16 3.1
239,630 + 15205 mRNA_6837 0.17 -0.5
239,770 + 15205 mRNA_6837 0.27 -0.5