Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6825

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6824: 15192 - K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1, at 213876 to 215865 15192 mRNA_6825: 15193 - K08876 SCYL1 SCY1-like protein 1, at 216078 to 219615 15193 mRNA_6826: 15194 - KOG2061 Uncharacterized MYND Zn-finger protein, at 219727 to 220528 15194

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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215,985 + 0.6
215,994 + -2.0
215,998 + -0.1
216,095 + -0.2
216,096 - -0.2
216,128 + -0.9
216,415 + -0.2
216,693 + 15193 mRNA_6825 0.17 -2.0
216,713 - 15193 mRNA_6825 0.18 -0.9
216,733 + 15193 mRNA_6825 0.19 -1.9
217,168 + 15193 mRNA_6825 0.31 -1.4
217,322 - 15193 mRNA_6825 0.35 -0.5
217,772 + 15193 mRNA_6825 0.48 -0.3
218,251 + 15193 mRNA_6825 0.61 0.3
218,316 - 15193 mRNA_6825 0.63 -1.9
218,354 + 15193 mRNA_6825 0.64 -0.5
218,961 + 15193 mRNA_6825 0.81 0.6
219,080 + 15193 mRNA_6825 0.85 0.2
219,283 + -1.8
219,461 - 0.1
219,509 + 1.1
219,825 + 15194 mRNA_6826 0.12 0.2
220,278 - 15194 mRNA_6826 0.69 -0.2
220,285 + 15194 mRNA_6826 0.70 1.1
220,292 - 15194 mRNA_6826 0.70 -0.4
220,426 + 15194 mRNA_6826 0.87 0.1
220,579 + 0.1
220,605 - -0.1