Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6708

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6707: 15075 - KOG3750 Inositol phospholipid synthesis protein, Scs3p, at 1499428 to 1503895 15075 mRNA_6708: 15076 - KOG3743 Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5), at 1504719 to 1508015 15076 mRNA_6709: 15077 - BLAST recombination signal binding protein-J kappa [Kal..., at 1508181 to 1509469 15077

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,503,778 + 0.1
1,503,799 + -1.0
1,503,915 + -0.4
1,503,925 - -0.4
1,503,926 - -0.5
1,503,926 + -0.1
1,503,930 + 0.7
1,503,950 - -0.4
1,504,009 - 0.5
1,504,016 - -1.9
1,504,023 + -1.0
1,504,029 - 0.9
1,504,032 + -0.3
1,504,037 - 0.4
1,504,048 - -2.0
1,504,092 - 0.5
1,504,094 - -0.1
1,504,101 - -0.7
1,504,101 - 1.1
1,504,105 - -0.5
1,504,155 - 0.9
1,504,160 - -0.3
1,504,166 + -0.4
1,504,170 + -0.7
1,504,171 + -1.0
1,504,185 - -1.1
1,504,187 - -0.0
1,504,188 + -1.1
1,504,189 - -0.5
1,504,189 + -0.8
1,504,190 + -1.2
1,504,264 + 0.2
1,504,281 + -0.2
1,504,288 + -0.4
1,504,293 - -0.5
1,504,295 + -0.3
1,504,306 + -0.7
1,504,307 + 0.1
1,504,314 - -0.1
1,504,315 - -0.2
1,504,322 + -0.1
1,504,325 + 0.2
1,504,329 + -0.4
1,504,330 - -0.9
1,504,334 - -1.8
1,504,350 - -0.2
1,504,368 + -0.7
1,504,390 + -0.4
1,504,400 - -0.2
1,504,413 + -0.4
1,504,438 - -1.3
1,504,441 - 0.2
1,504,446 + -1.6
1,504,454 + -1.8
1,504,473 - -0.5
1,504,475 - 0.3
1,504,491 - 0.2
1,504,491 - 0.8
1,504,493 - -1.4
1,504,624 + 1.8
1,504,644 - -1.9
1,505,195 - 15076 mRNA_6708 0.14 -0.4
1,505,198 - 15076 mRNA_6708 0.15 -0.9
1,505,519 + 15076 mRNA_6708 0.24 -0.4
1,505,617 + 15076 mRNA_6708 0.27 0.2
1,505,642 - 15076 mRNA_6708 0.28 -0.8
1,505,646 - 15076 mRNA_6708 0.28 -1.4
1,505,647 - 15076 mRNA_6708 0.28 -1.5
1,505,647 + 15076 mRNA_6708 0.28 -0.5
1,505,647 - 15076 mRNA_6708 0.28 0.6
1,505,648 - 15076 mRNA_6708 0.28 -0.2
1,505,654 + 15076 mRNA_6708 0.28 0.1
1,505,662 - 15076 mRNA_6708 0.29 0.7
1,505,706 + 15076 mRNA_6708 0.30 0.8
1,506,100 - 15076 mRNA_6708 0.42 -0.3
1,506,111 - 15076 mRNA_6708 0.42 -0.7
1,506,117 + 15076 mRNA_6708 0.42 0.1
1,506,153 + 15076 mRNA_6708 0.43 -0.0
1,506,426 - 15076 mRNA_6708 0.52 -1.0
1,506,691 + 15076 mRNA_6708 0.60 -0.2
1,507,402 + 15076 mRNA_6708 0.81 0.4
1,507,922 - -0.1
1,508,415 - 15077 mRNA_6709 0.18 -0.5