Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6641

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1322487 to 1325707 15008 mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1326359 to 1327984 15009 mRNA_6642: 15010 - KOG2684 Sirtuin 5 and related class III sirtuins (SIR2 family), at 1328184 to 1330070 15010

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,325,380 - 15008 mRNA_6640 0.90 0.7
1,325,445 + -0.1
1,325,469 - 0.5
1,325,606 - -1.0
1,325,636 - -0.5
1,325,652 - -1.1
1,325,918 - -1.1
1,325,920 + 0.4
1,325,939 + -0.0
1,325,949 - -0.7
1,326,098 + -1.0
1,326,119 - -0.7
1,326,227 - -0.3
1,326,255 + -0.3
1,326,518 - -0.4
1,326,792 + 15009 mRNA_6641 0.27 0.1
1,326,824 + 15009 mRNA_6641 0.29 1.1
1,327,234 - 15009 mRNA_6641 0.54 -0.5
1,327,653 - 15009 mRNA_6641 0.80 0.0
1,327,800 + 15009 mRNA_6641 0.89 0.9
1,327,803 - 15009 mRNA_6641 0.89 1.2
1,327,834 - 0.3
1,327,840 + -0.7
1,328,076 + -0.6
1,328,113 - -0.7
1,328,140 - 1.0
1,328,272 - -0.2
1,328,289 + 0.0
1,328,409 - 15010 mRNA_6642 0.12 -0.3
1,328,565 + 15010 mRNA_6642 0.20 0.6
1,328,575 + 15010 mRNA_6642 0.21 -0.3
1,328,614 - 15010 mRNA_6642 0.23 0.7
1,328,738 + 15010 mRNA_6642 0.29 -0.5