Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6612

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6611: 14979 - K03849 ALG8 alpha-1,3-glucosyltransferase, at 1240935 to 1243204 14979 mRNA_6612: 14980 - Hypothetical Protein, at 1243315 to 1245025 14980 mRNA_6613: 14981 - K08740 MSH4 DNA mismatch repair protein MSH4, at 1245585 to 1249013 14981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,242,985 - -0.4
1,243,368 + 1.0
1,243,793 + 14980 mRNA_6612 0.28 -0.3
1,243,860 + 14980 mRNA_6612 0.32 -1.2
1,244,174 - 14980 mRNA_6612 0.50 0.8
1,244,249 + 14980 mRNA_6612 0.55 -0.3
1,244,835 - 14980 mRNA_6612 0.89 -0.2
1,244,843 - 14980 mRNA_6612 0.89 0.6
1,244,847 + 14980 mRNA_6612 0.90 -0.3
1,244,984 + -1.9
1,244,985 - -0.3
1,245,000 - -0.0
1,245,131 - -0.1
1,245,149 - -0.3
1,245,164 + -1.4
1,245,284 - -1.0
1,245,427 + -0.3
1,245,438 + 0.1
1,245,440 - -0.1
1,245,452 + -0.4
1,245,734 - -1.6
1,245,759 + -0.5
1,245,847 - -0.3
1,245,858 + -0.8
1,245,995 - 14981 mRNA_6613 0.12 -1.1
1,246,025 - 14981 mRNA_6613 0.13 -1.0