Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6577

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6576: 14944 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 1141433 to 1143037 14944 mRNA_6577: 14945 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013,SUPERFAMILY--SSF54160, at 1143397 to 1147463 14945 mRNA_6578: 14946 - HMMPfam-pfkB family carbohydrate kinase-PF00294,SUPERFAMILY--SSF53613, at 1147858 to 1149094 14946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,142,409 + 14944 mRNA_6576 0.61 -0.0
1,142,535 + 14944 mRNA_6576 0.69 0.1
1,142,550 + 14944 mRNA_6576 0.70 -0.1
1,142,661 - 14944 mRNA_6576 0.77 -1.1
1,142,860 + 14944 mRNA_6576 0.89 -0.9
1,142,976 - 1.4
1,143,028 + -0.9
1,143,139 + -1.5
1,143,198 + -0.9
1,143,256 - 0.0
1,143,281 - -0.1
1,143,411 + -0.5
1,143,424 - 0.1
1,143,430 - -0.1
1,143,432 + -0.5
1,143,727 - -0.1
1,143,892 - 14945 mRNA_6577 0.12 0.1
1,143,894 - 14945 mRNA_6577 0.12 -0.5
1,144,901 - 14945 mRNA_6577 0.37 1.1
1,145,016 + 14945 mRNA_6577 0.40 1.3
1,145,017 + 14945 mRNA_6577 0.40 1.0
1,145,463 - 14945 mRNA_6577 0.51 0.8
1,146,046 + 14945 mRNA_6577 0.65 1.7
1,146,590 + 14945 mRNA_6577 0.79 0.2
1,146,973 - 14945 mRNA_6577 0.88 0.2
1,147,186 + 0.2
1,147,323 - 0.5
1,147,473 - 0.1
1,147,489 - 1.4
1,147,617 - 0.3
1,147,617 - -1.1
1,147,633 + -0.5
1,147,772 + 0.4
1,147,800 + -0.4
1,147,941 + 1.0
1,148,358 - 14946 mRNA_6578 0.40 -0.2