Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6554

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6553: 14921 - SUPERFAMILY--SSF52266, at 1077741 to 1079727 14921 mRNA_6554: 14922 - K15258 PARP6_8 poly [ADP-ribose] polymerase 6/8, at 1080694 to 1084243 14922 mRNA_6555: 14923 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1085124 to 1086396 14923

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,079,783 - -0.9
1,079,790 - -3.0
1,079,791 + 0.3
1,079,803 - -1.6
1,079,822 - -0.4
1,079,837 + 0.3
1,079,942 - 0.6
1,079,943 - -0.4
1,079,954 - -0.6
1,079,954 - 0.1
1,079,957 + -0.6
1,079,963 - -0.1
1,079,967 + -1.4
1,079,967 + -0.5
1,079,970 + 0.3
1,079,975 - 2.2
1,079,977 - -0.3
1,079,979 + -2.8
1,080,147 + -0.7
1,080,151 + -0.3
1,080,159 + 0.7
1,080,424 + -0.1
1,080,584 + 1.0
1,081,294 + 14922 mRNA_6554 0.17 0.1
1,081,603 - 14922 mRNA_6554 0.26 -1.1
1,081,881 - 14922 mRNA_6554 0.33 1.0
1,082,772 - 14922 mRNA_6554 0.59 0.8
1,083,223 - 14922 mRNA_6554 0.71 0.0
1,083,230 + 14922 mRNA_6554 0.71 0.2
1,083,365 + 14922 mRNA_6554 0.75 0.2
1,083,694 - 14922 mRNA_6554 0.85 -0.8
1,083,814 + 14922 mRNA_6554 0.88 -0.5
1,083,815 - 14922 mRNA_6554 0.88 -0.2
1,084,260 + -0.2
1,084,270 - -0.5
1,084,283 - -0.5
1,084,424 - -0.4
1,084,456 + -0.6
1,084,558 - -2.2
1,084,574 - -0.8
1,084,580 + 0.8
1,084,586 - -0.6
1,084,726 - -0.6
1,084,859 - 0.1
1,084,866 - -0.5
1,084,882 + -0.4
1,084,885 + -0.4
1,084,896 + -0.8
1,085,016 + 0.0
1,085,020 + -1.9
1,085,022 + -0.2
1,085,024 + -0.6
1,085,184 - -0.2
1,085,189 - -0.6
1,085,205 - -0.3