Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6525

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6524: 14892 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 999531 to 1001982 14892 mRNA_6525: 14893 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1002265 to 1003923 14893 mRNA_6526: 14894 - KOG2929 Transcription factor, component of CCR4 transcriptional complex, at 1004889 to 1006380 14894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,001,523 + 14892 mRNA_6524 0.81 -0.6
1,001,624 - 14892 mRNA_6524 0.85 -2.0
1,002,218 + -2.0
1,002,342 - -0.1
1,002,503 + 14893 mRNA_6525 0.14 -1.4
1,002,504 - 14893 mRNA_6525 0.14 -0.7
1,002,534 + 14893 mRNA_6525 0.16 -0.4
1,003,068 + 14893 mRNA_6525 0.48 -0.1
1,003,520 + 14893 mRNA_6525 0.76 0.6
1,004,076 - -0.8
1,004,497 + -1.1
1,004,830 - -0.1
1,004,841 - 0.1
1,004,861 - -0.5