Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6259

Experiments: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371903 to 374480 14626 mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377562 to 381779 14628

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
374,321 + 0.9
374,481 + -0.6
374,488 + -0.1
374,512 + -0.1
374,627 + -0.5
374,628 + 0.4
374,639 + -0.1
374,639 - -1.0
374,647 + -1.4
374,648 - 1.8
374,650 - -0.6
374,668 - -1.2
374,671 - -0.6
374,676 + 0.6
374,676 + -1.1
374,720 + -0.4
374,723 + -0.2
374,724 + -1.5
374,732 + 0.1
374,743 + -0.6
374,835 - 0.9
374,838 + 0.2
374,847 - 0.3
374,861 + 0.4
374,861 + 0.1
374,882 + 0.6
374,892 + 0.1
374,901 - 2.0
374,901 + -0.3
374,911 - -0.4
374,919 + 1.7
374,925 - 0.1
374,925 - 1.3
374,928 + -2.8
374,930 + -1.1
374,932 + -0.9
374,932 + -0.2
374,934 - -0.6
374,934 - -0.2
374,935 + -0.2
374,937 + -2.1
374,937 + -1.3
374,943 + 0.9
374,946 - 0.6
374,947 + 0.3
374,948 + 0.0
374,948 - -1.4
374,951 + -0.0
374,952 + -1.4
374,954 + -0.3
374,957 - 0.3
375,055 + -0.1
375,125 + -0.3
375,393 - 14627 mRNA_6259 0.19 -0.8
375,395 - 14627 mRNA_6259 0.19 -0.7
375,429 + 14627 mRNA_6259 0.21 -0.6
375,489 + 14627 mRNA_6259 0.23 -2.1
375,549 + 14627 mRNA_6259 0.26 -0.1
376,003 - 14627 mRNA_6259 0.48 0.5
376,383 + 14627 mRNA_6259 0.66 -0.3
377,019 - -0.1
377,463 - -0.4
377,929 - 0.4