Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6189

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6187: 14555 - BLAST Cytoplasmic dynein 1 intermediate chain 1 [Wallem..., at 208221 to 211423 14555 mRNA_6188: 14556 - Hypothetical Protein, at 211596 to 212147 14556 mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212357 to 214481 14557 mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215040 to 217246 14558

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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211,465 - -0.4
211,474 + 0.1
211,498 + -0.1
211,756 + 14556 mRNA_6188 0.29 0.9
211,782 - 14556 mRNA_6188 0.34 0.1
211,828 + 14556 mRNA_6188 0.42 -0.9
211,945 - 14556 mRNA_6188 0.63 1.3
211,959 + 14556 mRNA_6188 0.66 -1.4
212,014 + 14556 mRNA_6188 0.76 0.8
212,029 + 14556 mRNA_6188 0.78 0.2
212,807 + 14557 mRNA_6189 0.21 1.0
213,114 - 14557 mRNA_6189 0.36 -0.6
213,382 + 14557 mRNA_6189 0.48 -1.1
213,585 + 14557 mRNA_6189 0.58 0.5
213,993 + 14557 mRNA_6189 0.77 -0.0
213,993 + 14557 mRNA_6189 0.77 -0.2
214,017 + 14557 mRNA_6189 0.78 -1.1
214,103 + 14557 mRNA_6189 0.82 -1.2
214,568 + -0.5
214,607 + 0.3
214,702 - 0.1
214,719 + -0.9
214,726 - 0.3
214,733 + 0.2
214,889 - -1.6
214,906 - 0.5
215,201 + -1.1