Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6090

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6089: 14457 - KOG3098 Uncharacterized conserved protein, at 1622140 to 1623844 14457 mRNA_6090: 14458 - KOG0143 Iron/ascorbate family oxidoreductases, at 1624462 to 1625947 14458 mRNA_6091: 14459 - KOG1515 Arylacetamide deacetylase, at 1626072 to 1627990 14459

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,623,625 - 14457 mRNA_6089 0.87 -1.2
1,623,770 - -0.2
1,623,791 + 1.1
1,623,792 + 2.9
1,623,811 - 0.8
1,623,983 - -0.5
1,624,065 - -0.3
1,624,069 - -0.1
1,624,081 - 0.9
1,624,105 - 0.3
1,624,212 + 0.1
1,624,215 - 0.4
1,624,226 + 1.1
1,624,242 + -0.6
1,624,243 - 0.4
1,624,251 + 0.2
1,624,296 + -0.8
1,624,365 + -0.2
1,624,369 - -0.5
1,624,370 + -0.2
1,624,382 - -1.7
1,624,485 + -0.5
1,624,505 - -0.4
1,624,525 + -0.6
1,624,538 + -0.0
1,624,557 - -1.5
1,624,652 + 14458 mRNA_6090 0.13 1.0
1,624,716 - 14458 mRNA_6090 0.17 -0.0
1,624,831 - 14458 mRNA_6090 0.25 0.3
1,625,252 - 14458 mRNA_6090 0.53 0.4
1,625,268 + 14458 mRNA_6090 0.54 -1.1
1,625,372 - 14458 mRNA_6090 0.61 0.2
1,625,438 - 14458 mRNA_6090 0.66 -0.5
1,625,532 - 14458 mRNA_6090 0.72 -0.1
1,625,846 - 0.7
1,625,847 + 0.1
1,625,851 - 0.5
1,625,861 - 0.2
1,625,883 - -0.7
1,626,053 + 0.3
1,626,084 - -1.1
1,626,440 - 14459 mRNA_6091 0.19 0.9
1,626,740 - 14459 mRNA_6091 0.35 -1.5
1,626,886 + 14459 mRNA_6091 0.42 0.0