Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5864

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5863: 14231 - K09281 K09281 copper-fist transcription factor, at 1112014 to 1113676 14231 mRNA_5864: 14232 - K01322 PREP prolyl oligopeptidase, at 1113887 to 1116821 14232 mRNA_5865: 14233 - KOG0800 FOG Predicted E3 ubiquitin ligase, at 1117097 to 1118879 14233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,113,674 + -0.4
1,113,690 + 0.2
1,113,838 - -0.9
1,113,857 + 0.0
1,113,968 - 0.1
1,113,977 + 0.3
1,114,138 - 0.5
1,114,146 - -0.1
1,114,158 - 1.4
1,114,163 + -0.2
1,114,168 - 0.2
1,114,185 - 14232 mRNA_5864 0.10 -0.2
1,114,276 - 14232 mRNA_5864 0.13 -0.6
1,114,308 - 14232 mRNA_5864 0.14 0.2
1,114,366 - 14232 mRNA_5864 0.16 -3.0
1,114,642 + 14232 mRNA_5864 0.26 -1.4
1,114,742 - 14232 mRNA_5864 0.29 -0.1
1,114,798 - 14232 mRNA_5864 0.31 0.2
1,115,016 + 14232 mRNA_5864 0.38 0.1
1,115,150 + 14232 mRNA_5864 0.43 0.2
1,115,264 + 14232 mRNA_5864 0.47 0.3
1,115,741 + 14232 mRNA_5864 0.63 -0.1
1,115,887 - 14232 mRNA_5864 0.68 0.1
1,115,984 - 14232 mRNA_5864 0.71 -0.2
1,116,425 + 14232 mRNA_5864 0.86 -0.9
1,116,458 - 14232 mRNA_5864 0.88 -1.0
1,116,493 + 14232 mRNA_5864 0.89 0.0
1,116,593 + 0.6
1,116,704 - -0.1
1,116,836 - -0.1
1,116,879 + 0.5
1,116,885 + -0.8
1,116,899 + 0.1
1,117,004 - -0.8
1,117,005 - 0.5
1,117,005 - -0.2
1,117,005 - -0.8
1,117,013 - 0.6
1,117,038 - -0.9
1,117,184 + 1.1
1,117,186 + -0.2
1,117,202 + 0.0
1,117,229 - 0.5
1,117,321 + 14233 mRNA_5865 0.13 -0.5
1,117,321 - 14233 mRNA_5865 0.13 -0.3
1,117,323 + 14233 mRNA_5865 0.13 -0.1
1,117,333 - 14233 mRNA_5865 0.13 -0.2
1,117,358 + 14233 mRNA_5865 0.15 -0.7
1,117,772 + 14233 mRNA_5865 0.38 0.9