Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5798

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962183 to 965371 14165 mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965628 to 966973 14166 mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967190 to 969688 14167

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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964,650 - 14165 mRNA_5797 0.77 -0.6
964,716 - 14165 mRNA_5797 0.79 0.1
965,283 - -0.4
965,601 - 0.1
965,635 - -0.0
966,025 - 14166 mRNA_5798 0.29 0.3
966,286 - 14166 mRNA_5798 0.49 -0.0
966,785 - 14166 mRNA_5798 0.86 1.0
966,917 - 0.5