Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5745

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834713 to 839482 14112 mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840305 to 845790 14113

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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839,637 - 0.7
839,640 - 0.6
839,807 - -0.6
839,809 - -1.0
839,813 + -0.0
839,822 + -2.5
839,822 + 0.6
839,825 + -0.7
839,828 + -1.0
839,840 + -0.2
839,842 + 0.3
839,842 + -1.2
839,843 - 1.2
839,848 + 1.3
839,852 + 1.2
839,852 + -0.1
839,853 - -0.2
839,988 - 0.1
839,998 + -0.2
840,000 - 1.0
840,011 - -1.5
840,125 - 0.1
840,142 - -1.1
840,144 - -0.3
840,148 + 0.1
840,150 + -0.4
840,300 + -0.5
840,318 + -0.3
841,610 + 14113 mRNA_5745 0.24 -0.1
842,016 - 14113 mRNA_5745 0.31 -0.6
842,043 + 14113 mRNA_5745 0.32 0.8
843,148 + 14113 mRNA_5745 0.52 1.2
844,098 + 14113 mRNA_5745 0.69 -0.8
844,571 - 14113 mRNA_5745 0.78 1.1
844,750 + 14113 mRNA_5745 0.81 0.3
845,124 - 14113 mRNA_5745 0.88 1.3
846,024 - 0.1
846,051 + 0.7
846,072 - 0.7
846,074 + -0.0
846,157 - -0.7
846,169 - -0.9
846,196 + -0.8
846,200 + -0.6
846,200 - 0.8
846,215 + 0.1
846,255 + 1.4
846,287 + 2.0
846,306 - 1.6
846,330 + -0.8
846,490 - 0.3
846,503 + 0.3
846,641 + -0.2
846,777 + 0.5
846,777 + 0.4
846,777 - 1.5