Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5704

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728026 to 730424 14072 mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731059 to 731970 14073

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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727,144 - 1.5
727,162 + 0.7
727,230 + 0.3
727,259 - -0.2
727,275 - 0.5
727,289 - -0.6
727,295 + 1.2
727,317 - 0.2
727,318 + -0.0
727,319 + 0.3
727,338 + 1.6
727,348 - -0.3
727,349 + 0.4
727,359 + -0.1
727,468 - 0.7
727,473 + 0.0
727,483 - -0.6
727,504 + -1.1
727,518 - 0.9
727,530 + 0.5
727,538 + -0.0
727,608 - -1.3
727,696 - -0.3
727,697 - -0.1
727,728 + -0.1
727,736 + -0.7
727,745 + 0.1
727,749 + -0.4
727,866 - -1.3
727,875 + -1.4
727,891 + -0.6
727,892 - -0.4
727,903 - 0.0
728,037 - -0.4
728,041 + -1.2
728,349 + 14072 mRNA_5704 0.13 -0.1
729,218 + 14072 mRNA_5704 0.50 -0.5
729,515 + 14072 mRNA_5704 0.62 0.0
729,699 - 14072 mRNA_5704 0.70 -1.7
729,785 - 14072 mRNA_5704 0.73 -1.3
729,802 + 14072 mRNA_5704 0.74 -0.3
729,822 - 14072 mRNA_5704 0.75 0.5
730,270 - -0.7
730,321 - 0.6
730,477 - -0.4
730,570 - -0.1
730,666 - -0.1
730,720 + 0.1
730,732 + -0.5
730,750 + -0.1
730,890 + 0.0
730,902 + 1.1
730,911 - -0.0
731,155 - 14073 mRNA_5705 0.11 0.8
731,181 - 14073 mRNA_5705 0.13 0.6
731,212 + 14073 mRNA_5705 0.17 0.8