Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5599

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5598: 13966 - KOG0118 FOG RRM domain, at 474328 to 475458 13966 mRNA_5599: 13967 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 475591 to 478385 13967 mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479032 to 480783 13968

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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475,750 + -0.3
475,751 + -0.3
475,752 + 1.7
475,761 + -0.6
475,766 - 0.8
475,771 + -0.2
475,777 + -0.5
475,921 + 13967 mRNA_5599 0.12 0.5
475,922 - 13967 mRNA_5599 0.12 0.1
475,932 - 13967 mRNA_5599 0.12 0.3
475,933 - 13967 mRNA_5599 0.12 -1.1
475,947 + 13967 mRNA_5599 0.13 -0.7
475,950 + 13967 mRNA_5599 0.13 0.6
475,954 + 13967 mRNA_5599 0.13 -0.5
475,984 - 13967 mRNA_5599 0.14 -0.5
476,074 - 13967 mRNA_5599 0.17 -0.3
476,078 - 13967 mRNA_5599 0.17 0.8
476,088 - 13967 mRNA_5599 0.18 -0.4
476,093 - 13967 mRNA_5599 0.18 -0.4
476,100 + 13967 mRNA_5599 0.18 0.3
476,100 + 13967 mRNA_5599 0.18 0.1
476,104 - 13967 mRNA_5599 0.18 1.2
476,105 - 13967 mRNA_5599 0.18 0.1
476,105 + 13967 mRNA_5599 0.18 -1.1
476,122 + 13967 mRNA_5599 0.19 0.3
476,141 - 13967 mRNA_5599 0.20 0.1
476,142 - 13967 mRNA_5599 0.20 -0.0
476,152 - 13967 mRNA_5599 0.20 1.1
476,177 + 13967 mRNA_5599 0.21 -1.4
476,199 + 13967 mRNA_5599 0.22 1.0
476,290 + 13967 mRNA_5599 0.25 -0.0
476,296 - 13967 mRNA_5599 0.25 -1.3
476,326 + 13967 mRNA_5599 0.26 0.0
476,326 + 13967 mRNA_5599 0.26 -0.3
476,339 - 13967 mRNA_5599 0.27 0.6
476,352 - 13967 mRNA_5599 0.27 -0.3
476,363 - 13967 mRNA_5599 0.28 1.0
476,364 - 13967 mRNA_5599 0.28 -2.0
476,364 - 13967 mRNA_5599 0.28 1.0
476,365 + 13967 mRNA_5599 0.28 -0.2
476,368 - 13967 mRNA_5599 0.28 0.3
476,377 + 13967 mRNA_5599 0.28 0.3
476,378 + 13967 mRNA_5599 0.28 0.8
476,379 - 13967 mRNA_5599 0.28 0.2
476,382 - 13967 mRNA_5599 0.28 0.5
476,393 - 13967 mRNA_5599 0.29 -0.9
476,401 - 13967 mRNA_5599 0.29 0.1
476,410 + 13967 mRNA_5599 0.29 -0.2
476,410 - 13967 mRNA_5599 0.29 0.4
476,411 + 13967 mRNA_5599 0.29 -0.8
476,429 + 13967 mRNA_5599 0.30 -0.9
476,437 - 13967 mRNA_5599 0.30 -2.0
476,442 - 13967 mRNA_5599 0.30 -0.3
476,444 - 13967 mRNA_5599 0.31 -0.4
476,446 - 13967 mRNA_5599 0.31 -1.0
476,448 + 13967 mRNA_5599 0.31 -1.8
476,449 + 13967 mRNA_5599 0.31 -1.5
476,453 + 13967 mRNA_5599 0.31 -0.4
476,463 + 13967 mRNA_5599 0.31 -0.5
476,465 + 13967 mRNA_5599 0.31 -0.1
476,468 + 13967 mRNA_5599 0.31 -0.6
476,469 + 13967 mRNA_5599 0.31 -0.1
476,477 + 13967 mRNA_5599 0.32 -1.7
476,586 + 13967 mRNA_5599 0.36 0.8
476,601 + 13967 mRNA_5599 0.36 -0.7
476,602 + 13967 mRNA_5599 0.36 -0.5
476,602 + 13967 mRNA_5599 0.36 0.0
476,613 + 13967 mRNA_5599 0.37 0.3
476,739 + 13967 mRNA_5599 0.41 0.6
476,892 + 13967 mRNA_5599 0.47 0.8
476,916 + 13967 mRNA_5599 0.47 -0.5
477,292 + 13967 mRNA_5599 0.61 0.2
477,302 - 13967 mRNA_5599 0.61 -0.4
477,328 + 13967 mRNA_5599 0.62 -0.0
477,422 + 13967 mRNA_5599 0.66 -0.7
477,534 - 13967 mRNA_5599 0.70 0.6
477,797 + 13967 mRNA_5599 0.79 -1.0
477,838 - 13967 mRNA_5599 0.80 -0.0
477,916 + 13967 mRNA_5599 0.83 0.3
478,137 - 0.5
478,453 - -0.4
478,491 - -0.3
478,718 + -0.6
478,867 - -0.8
478,874 - -0.5