Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5473

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5472: 13840 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 173167 to 176789 13840 mRNA_5473: 13841 - KOG2226 Proteins containing regions of low-complexity, at 176927 to 180681 13841 mRNA_5474: 13842 - HMMPfam-Mitochondrial ATP synthase epsilon chain-PF04627,SUPERFAMILY--SSF48690, at 180960 to 181593 13842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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175,931 + 13840 mRNA_5472 0.76 0.3
176,795 + 0.1
176,954 - 0.2
177,446 - 13841 mRNA_5473 0.14 0.1
177,653 - 13841 mRNA_5473 0.19 -2.8
177,976 - 13841 mRNA_5473 0.28 -0.3
178,098 - 13841 mRNA_5473 0.31 -0.2
178,919 + 13841 mRNA_5473 0.53 0.2
179,038 - 13841 mRNA_5473 0.56 0.1
179,756 - 13841 mRNA_5473 0.75 0.6
180,173 - 13841 mRNA_5473 0.86 -0.4
180,211 + 13841 mRNA_5473 0.87 -0.9
180,491 - 1.0
180,638 - -0.0
180,907 + 1.0
180,907 + 1.4
180,910 - -0.1
180,911 + 1.2
180,911 + 1.1
180,914 - 0.1
180,914 - 0.8
180,921 + 1.1