Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5418

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53998 to 56725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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56,079 + 13785 mRNA_5417 0.76 0.3
56,363 + 13785 mRNA_5417 0.87 0.0
56,368 + 13785 mRNA_5417 0.87 -0.7
56,398 - 13785 mRNA_5417 0.88 0.8
56,647 + -0.1
56,668 - -0.2
56,684 - 1.6
56,782 - 0.3
56,804 - -0.7
56,813 - -0.1
56,828 - -1.0
56,837 - 1.1
56,852 - 0.2
56,856 + 0.5
56,971 + -0.7
57,071 - 13786 mRNA_5418 0.10 0.7
57,095 - 13786 mRNA_5418 0.12 0.3
57,114 + 13786 mRNA_5418 0.13 -1.3
57,271 + 13786 mRNA_5418 0.23 0.1
57,380 - 13786 mRNA_5418 0.30 -0.1
57,513 + 13786 mRNA_5418 0.39 -2.2
57,518 - 13786 mRNA_5418 0.40 -0.0
57,518 - 13786 mRNA_5418 0.40 -0.3
57,531 + 13786 mRNA_5418 0.40 0.1
57,531 + 13786 mRNA_5418 0.40 -0.7
57,670 - 13786 mRNA_5418 0.50 -0.1
57,684 - 13786 mRNA_5418 0.51 -0.8
57,702 + 13786 mRNA_5418 0.52 0.1
57,776 + 13786 mRNA_5418 0.57 -0.8
57,778 - 13786 mRNA_5418 0.57 1.3
57,948 - 13786 mRNA_5418 0.68 -0.4
58,060 - 13786 mRNA_5418 0.75 -0.2
58,079 - 13786 mRNA_5418 0.77 -0.5
58,138 - 13786 mRNA_5418 0.81 -0.7
58,166 - 13786 mRNA_5418 0.82 0.0
58,212 - 13786 mRNA_5418 0.85 -0.6
58,214 + 13786 mRNA_5418 0.86 -0.3
58,395 + -0.1
58,519 - -1.6
58,682 + -0.6
58,816 + -0.4
59,111 + 13787 mRNA_5419 0.27 -0.5
59,124 + 13787 mRNA_5419 0.28 -0.8
59,195 - 13787 mRNA_5419 0.33 1.5
59,258 - 13787 mRNA_5419 0.38 0.0
59,418 + 13787 mRNA_5419 0.50 -0.0
59,424 + 13787 mRNA_5419 0.50 -1.4