Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5413

Experiments: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41309 to 43272 13780 mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46162 to 47875 13782

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
42,928 - 13780 mRNA_5412 0.82 1.0
42,929 + 13780 mRNA_5412 0.82 0.9
43,188 + -0.2
43,313 + -0.6
43,336 + -1.9
43,344 - 0.3
43,544 - 1.0
43,555 + 2.4
43,639 - -0.1
43,669 + 0.6
43,857 - -1.0
43,980 - -1.5
43,985 + -1.1
43,997 + -0.5
44,156 + 13781 mRNA_5413 0.15 -0.2
44,206 + 13781 mRNA_5413 0.17 -1.3
44,235 - 13781 mRNA_5413 0.19 0.6
44,237 + 13781 mRNA_5413 0.19 -0.4
44,278 + 13781 mRNA_5413 0.21 0.7
44,286 + 13781 mRNA_5413 0.21 -0.5
44,311 + 13781 mRNA_5413 0.22 -0.9
44,328 + 13781 mRNA_5413 0.23 -0.3
44,449 + 13781 mRNA_5413 0.28 -0.4
44,463 - 13781 mRNA_5413 0.29 0.9
44,563 + 13781 mRNA_5413 0.33 1.5
44,578 - 13781 mRNA_5413 0.34 0.3
44,616 - 13781 mRNA_5413 0.36 -1.9
44,616 + 13781 mRNA_5413 0.36 0.7
44,660 + 13781 mRNA_5413 0.38 -0.2
44,664 - 13781 mRNA_5413 0.38 0.1
44,690 + 13781 mRNA_5413 0.39 0.3
45,095 - 13781 mRNA_5413 0.57 0.5
45,095 - 13781 mRNA_5413 0.57 -2.5
45,103 + 13781 mRNA_5413 0.58 -0.9
45,154 - 13781 mRNA_5413 0.60 0.0
45,176 - 13781 mRNA_5413 0.61 -0.1
45,275 + 13781 mRNA_5413 0.65 -0.4
45,595 + 13781 mRNA_5413 0.80 -1.2
45,623 - 13781 mRNA_5413 0.81 -0.0
45,669 - 13781 mRNA_5413 0.83 -1.1
45,678 - 13781 mRNA_5413 0.84 -1.0
45,678 - 13781 mRNA_5413 0.84 1.6
45,684 + 13781 mRNA_5413 0.84 0.5
45,706 + 13781 mRNA_5413 0.85 -0.3
45,709 + 13781 mRNA_5413 0.85 0.8
45,715 - 13781 mRNA_5413 0.85 -0.3
45,999 + -2.1
46,007 - -0.8
46,120 - 0.2
46,124 - -0.0
46,132 - -1.4
46,154 - -0.5
46,156 - 0.0
46,446 - 13782 mRNA_5414 0.17 0.7
46,447 + 13782 mRNA_5414 0.17 -0.7
46,448 - 13782 mRNA_5414 0.17 -1.1
46,540 - 13782 mRNA_5414 0.22 -0.5
46,629 + 13782 mRNA_5414 0.27 -0.7
46,671 + 13782 mRNA_5414 0.30 0.5
46,746 - 13782 mRNA_5414 0.34 -0.5
47,024 + 13782 mRNA_5414 0.50 -0.8