Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5395

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763 mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2092 to 5786 13764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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158 - -0.2
159 - 0.2
160 - -2.2
169 - 1.0
180 - -1.7
189 + 0.1
198 + 0.3
201 - -1.9
208 - 0.3
210 + -1.0
225 + 13762 mRNA_5394 0.11 -1.4
225 + 13762 mRNA_5394 0.11 0.5
244 + 13762 mRNA_5394 0.13 1.6
245 - 13762 mRNA_5394 0.13 -0.6
271 - 13762 mRNA_5394 0.16 -0.7
276 - 13762 mRNA_5394 0.16 -1.4
277 + 13762 mRNA_5394 0.16 0.3
280 - 13762 mRNA_5394 0.17 0.3
306 + 13762 mRNA_5394 0.19 0.5
317 - 13762 mRNA_5394 0.21 -0.1
345 + 13762 mRNA_5394 0.23 -1.5
345 - 13762 mRNA_5394 0.23 0.2
347 + 13762 mRNA_5394 0.24 0.0
359 - 13762 mRNA_5394 0.25 -1.8
387 - 13762 mRNA_5394 0.28 -1.0
399 + 13762 mRNA_5394 0.29 0.2
434 + 13762 mRNA_5394 0.33 0.1
447 - 13762 mRNA_5394 0.34 -0.8
485 - 13762 mRNA_5394 0.38 -0.1
543 + 13762 mRNA_5394 0.44 0.4
649 + 13762 mRNA_5394 0.55 1.3
667 + 13762 mRNA_5394 0.57 -1.8
667 - 13762 mRNA_5394 0.57 0.9
678 - 13762 mRNA_5394 0.58 0.4
718 + 13762 mRNA_5394 0.63 -0.3
723 + 13762 mRNA_5394 0.63 -1.4
802 + 13762 mRNA_5394 0.71 0.5
806 + 13762 mRNA_5394 0.72 -0.8
905 - 13762 mRNA_5394 0.82 -0.4
911 + 13762 mRNA_5394 0.83 -0.2
965 + 13762 mRNA_5394 0.88 0.0
966 + 13762 mRNA_5394 0.89 0.3
968 + 13762 mRNA_5394 0.89 -1.2
1,014 - -1.8
1,084 - -0.6
1,103 - 0.1
1,110 + -0.7
1,245 - 13763 mRNA_5395 0.11 0.3
1,260 - 13763 mRNA_5395 0.13 0.3
1,376 - 13763 mRNA_5395 0.27 0.3
1,438 + 13763 mRNA_5395 0.34 0.5
1,438 + 13763 mRNA_5395 0.34 0.9
1,438 + 13763 mRNA_5395 0.34 -2.2
1,523 + 13763 mRNA_5395 0.44 -0.9
1,528 - 13763 mRNA_5395 0.45 -0.3
1,533 + 13763 mRNA_5395 0.45 0.2
1,538 + 13763 mRNA_5395 0.46 0.1
1,538 - 13763 mRNA_5395 0.46 -0.7
1,556 + 13763 mRNA_5395 0.48 1.5
1,639 + 13763 mRNA_5395 0.58 -0.4
1,854 - 13763 mRNA_5395 0.83 -0.0
1,855 - 13763 mRNA_5395 0.83 -0.2
1,887 - 13763 mRNA_5395 0.87 -0.6
1,908 - 13763 mRNA_5395 0.89 -0.5
2,000 - 1.4
2,009 + 1.4
2,093 + -0.4
2,125 - 0.8
2,156 - -0.9
2,162 + -0.9
2,397 + -0.4
2,412 + 0.1
2,570 + 13764 mRNA_5396 0.13 1.1
2,586 + 13764 mRNA_5396 0.13 0.5
2,594 - 13764 mRNA_5396 0.14 -2.3
2,597 + 13764 mRNA_5396 0.14 0.3
2,661 + 13764 mRNA_5396 0.15 -0.0
2,773 + 13764 mRNA_5396 0.18 0.9
2,847 - 13764 mRNA_5396 0.20 -0.1
2,895 - 13764 mRNA_5396 0.22 -0.1
2,923 + 13764 mRNA_5396 0.22 -0.2