Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5232

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5231: 13599 - Hypothetical Protein, at 216501 to 218178 13599 mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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217,716 - 13599 mRNA_5231 0.72 0.4
217,723 - 13599 mRNA_5231 0.73 0.6
217,739 + 13599 mRNA_5231 0.74 -1.1
217,845 - 13599 mRNA_5231 0.80 0.6
217,861 - 13599 mRNA_5231 0.81 -0.2
217,877 + 13599 mRNA_5231 0.82 -0.7
217,896 - 13599 mRNA_5231 0.83 -0.2
218,022 - -0.3
218,024 + -0.5
218,030 - 0.7
218,030 - -0.4
218,031 - -0.0
218,045 - -2.0
218,046 + 3.1
218,054 - 0.2
218,054 - -0.1
218,055 + 0.1
218,055 + 0.1
218,059 + -0.6
218,062 - -0.9
218,063 - -0.6
218,064 + 0.6
218,066 - -0.6
218,068 + 0.1
218,072 - -0.3
218,074 + -2.1
218,074 - 0.5
218,080 + -0.8
218,093 + 0.2
218,096 + -0.2
218,099 - -0.6
218,105 - 1.1
218,120 + 0.8
218,128 - 0.0
218,133 - -1.8
218,142 - 0.5
218,147 + -0.4
218,158 - -1.3
218,160 + -0.2
218,160 + -0.3
218,162 + 0.3
218,164 + -1.3
218,165 + -1.3
218,165 - -1.0
218,166 + -0.0
218,218 - -0.4
218,220 - -0.1
218,245 + 0.4
218,247 + 1.0
218,263 + -0.2
218,294 + 0.2
218,295 - -0.5
218,324 - -1.4
218,328 - 0.0
218,334 - 0.0
218,334 + -0.0
218,337 - 0.0
218,338 - -0.4
218,339 + 1.2
218,341 + 0.2
218,411 + -1.2
218,411 + -0.3
218,505 - 1.3
218,510 - -0.7
218,641 + -1.6
218,658 - 0.3
218,659 - -0.5
218,659 + 0.5
218,933 + 13600 mRNA_5232 0.12 -0.1
218,936 + 13600 mRNA_5232 0.12 0.0
218,937 - 13600 mRNA_5232 0.12 0.4
219,076 + 13600 mRNA_5232 0.19 0.1
219,080 - 13600 mRNA_5232 0.19 -1.0
219,227 - 13600 mRNA_5232 0.26 0.4
219,525 + 13600 mRNA_5232 0.41 0.1
219,667 - 13600 mRNA_5232 0.47 -0.2
219,792 - 13600 mRNA_5232 0.54 0.5
220,665 - -0.9
220,761 + -0.2
220,803 + -0.9
220,809 + -0.9
220,811 - 0.3
220,937 - -0.3
220,942 - -0.5
220,948 + -0.9
220,965 - -0.5
220,965 + -0.1
220,991 + 0.5
220,993 - -0.3
221,027 + 0.7
221,043 - 0.1
221,044 + 0.2
221,062 - 0.5
221,062 - 2.1
221,064 - -1.4
221,072 - 0.1
221,075 - 0.1
221,081 - -0.1
221,094 + 0.0
221,100 - -0.1
221,101 + -0.6
221,102 - 1.8
221,103 + 0.7
221,105 + 1.2
221,106 - 0.4
221,107 + -0.2
221,123 + 0.3
221,136 + -0.2
221,145 - 0.4
221,146 + -0.3
221,152 + 0.2
221,171 + 0.4
221,179 + 0.2
221,191 - -0.7
221,203 - -1.3
221,204 - -0.5
221,217 + -1.2
221,217 - -1.1
221,219 - -0.4
221,249 + -0.3
221,253 - -1.8
221,253 - 0.0
221,295 + 0.1
221,310 - 0.1
221,318 + 0.2
221,350 + 0.1
221,362 + 0.3
221,368 - -0.2
221,370 + -0.4
221,380 + 0.9
221,381 + -0.8
221,396 + 0.6
221,398 - -0.9
221,398 + 0.8
221,405 + 0.1
221,405 + -0.6
221,411 - -1.8
221,411 + -0.3
221,411 - -0.8
221,412 - -0.7
221,415 + 0.2
221,419 + -0.8
221,419 + -0.1
221,431 + -1.0
221,460 + 0.1
221,465 - -0.5
221,477 - -1.0
221,501 + -1.2
221,508 - -0.5
221,530 + 0.6
221,535 - 1.6
221,535 + 0.2
221,540 - -0.6
221,540 + -0.3
221,540 + 0.7
221,547 + 0.7
221,548 + -0.4
221,552 - -0.8
221,552 + -0.6
221,555 - -1.1
221,555 - -0.2
221,558 + -0.1
221,683 + -0.7
221,707 + -0.4
221,710 + 0.6