Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5205

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5205: 13573 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 148303 to 148964 13573 mRNA_5206: 13574 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 149878 to 151168 13574

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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147,662 + -0.9
147,890 - -0.9
148,148 - -0.6
148,173 + 0.4
148,176 + -0.4
148,187 + 0.2
148,205 + 0.3
148,213 - 0.3
148,321 - -0.1
148,396 - 13573 mRNA_5205 0.14 -0.1
148,487 - 13573 mRNA_5205 0.28 1.7
148,506 + 13573 mRNA_5205 0.31 0.1
148,629 + 13573 mRNA_5205 0.49 -0.4
148,738 - 13573 mRNA_5205 0.66 -0.2
148,822 + 13573 mRNA_5205 0.78 0.2
148,931 + 0.5
148,961 + -0.5
149,102 - -0.2
149,178 - -1.6
149,279 - 0.8
149,388 + 0.1
149,434 - -0.3
149,455 - -0.9
149,524 + -0.9
149,548 - 2.3
149,606 - 0.0
149,608 + -1.1
149,675 - 0.6
149,699 + -1.6
149,871 + -0.8