Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5188

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5187: 13555 - KOG2533 Permease of the major facilitator superfamily, at 103886 to 106875 13555 mRNA_5188: 13556 - HMMPfam-Protein of unknown function (DUF3421)-PF11901,SMART-Repeats found in Drosophila proteins.-SM00696, at 107668 to 108466 13556 mRNA_5189: 13557 - K14290 XPO1, CRM1 exportin-1, at 109082 to 113752 13557

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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106,948 + -1.2
106,949 - 0.0
106,955 + -0.5
106,962 - -0.3
106,982 + 0.3
106,990 + 0.7
107,017 + 0.0
107,018 + -0.3
107,022 + -0.5
107,025 + 0.6
107,046 - 0.6
107,049 + 0.6
107,051 + -0.2
107,053 + -1.5
107,068 - -0.8
107,072 - 1.3
107,078 + -0.7
107,090 + -1.5
107,093 - -0.7
107,094 + -0.2
107,097 + -0.6
107,138 - -0.2
107,144 - -0.9
107,153 - 0.2
107,167 + 0.4
107,172 + 0.4
107,173 + -0.3
107,176 - -2.3
107,275 + -0.5
107,328 + -0.2
107,341 - 0.1
107,355 + -0.0
107,355 + -0.7
107,362 - 1.1
107,433 - -1.0
107,436 + -0.5
107,438 + -0.6
107,459 - -0.2
107,468 + 0.2
107,587 + -0.1
107,618 - -0.2
107,749 - 13556 mRNA_5188 0.10 -0.3
107,763 - 13556 mRNA_5188 0.12 0.1
107,767 - 13556 mRNA_5188 0.12 0.9
107,784 - 13556 mRNA_5188 0.15 -0.4
108,175 - 13556 mRNA_5188 0.63 1.3
108,208 - 13556 mRNA_5188 0.68 -0.1
108,508 - 0.4
108,645 - -0.8
108,647 - 1.0
108,665 + -0.4
108,772 - -0.5
108,784 - -0.1
108,803 + -0.6
108,829 + 0.3
108,926 - 1.0
108,942 - -1.1
108,956 + -0.4