Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5157

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36318 to 38711 13525 mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39677 to 40567 13526

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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35,406 - 13524 mRNA_5156 0.83 -1.0
35,499 - 13524 mRNA_5156 0.86 0.2
35,517 + 13524 mRNA_5156 0.87 -0.3
35,667 - -0.0
35,828 - -3.2
35,836 + -0.0
35,981 - 0.3
36,100 + -0.8
36,103 - -0.5
36,108 + -1.2
36,154 - -1.3
36,161 + -0.0
36,296 + 0.7
36,535 - -0.5
36,535 - 0.7
36,579 - 13525 mRNA_5157 0.11 -0.2
36,585 + 13525 mRNA_5157 0.11 0.0
36,662 + 13525 mRNA_5157 0.14 -1.1
36,693 + 13525 mRNA_5157 0.16 0.6
36,834 + 13525 mRNA_5157 0.22 -0.9
36,847 + 13525 mRNA_5157 0.22 0.1
37,305 - 13525 mRNA_5157 0.41 -0.7
37,305 + 13525 mRNA_5157 0.41 -0.7
37,416 + 13525 mRNA_5157 0.46 -1.0
37,476 + 13525 mRNA_5157 0.48 0.9
37,495 - 13525 mRNA_5157 0.49 -1.0
37,580 - 13525 mRNA_5157 0.53 -0.7
37,746 - 13525 mRNA_5157 0.60 -0.3
37,785 + 13525 mRNA_5157 0.61 -0.5
37,843 - 13525 mRNA_5157 0.64 0.3
37,849 - 13525 mRNA_5157 0.64 0.2
38,061 - 13525 mRNA_5157 0.73 -0.8
38,068 + 13525 mRNA_5157 0.73 2.0
38,383 + 13525 mRNA_5157 0.86 -0.4
38,778 + 0.3
39,193 - -0.0
39,203 + -0.0
39,350 - -1.6
39,482 + 0.5
39,521 + 0.3