Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5119

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5118: 13486 - K05349 bglX beta-glucosidase, at 1800635 to 1803494 13486 mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1804045 to 1805977 13487 mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1806857 to 1808752 13488

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,803,130 - 13486 mRNA_5118 0.87 0.1
1,803,405 + 0.3
1,803,549 - -0.6
1,803,551 - -0.1
1,803,552 - 0.3
1,803,552 + 0.1
1,803,560 + -0.8
1,803,564 - 0.2
1,803,573 - -0.7
1,803,573 - -0.9
1,803,574 + -0.3
1,803,588 - 1.1
1,803,589 + -0.1
1,803,607 - 0.3
1,803,609 + -1.6
1,803,642 + -0.7
1,803,739 - -1.4
1,804,201 + 1.1
1,804,794 - 13487 mRNA_5119 0.39 -0.6
1,805,056 + 13487 mRNA_5119 0.52 1.6
1,805,736 - 13487 mRNA_5119 0.87 0.2
1,805,764 + 13487 mRNA_5119 0.89 0.4
1,805,898 - 0.7
1,805,900 - 1.0
1,805,905 + -1.3
1,806,051 - 0.1
1,806,071 - 1.7
1,806,088 - -1.7
1,806,177 - 0.8
1,806,378 + 0.4
1,806,786 + -0.9
1,806,804 - 0.4