Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5082

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5081: 13449 - K10396 KIF5 kinesin family member 5, at 1701702 to 1705465 13449 mRNA_5082: 13450 - K10696 BRE1 E3 ubiquitin-protein ligase BRE1, at 1706172 to 1709244 13450 mRNA_5083: 13451 - Hypothetical Protein, at 1709855 to 1711486 13451

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,705,373 + 0.9
1,705,512 - -1.4
1,705,646 - 1.0
1,705,653 + 0.3
1,705,656 - -2.0
1,705,795 + 0.5
1,705,807 + 0.0
1,705,811 - -0.1
1,705,812 - 0.6
1,706,081 - 0.4
1,706,085 + 2.8
1,706,235 - -0.8
1,706,383 + 1.0
1,707,351 - 13450 mRNA_5082 0.38 0.2
1,708,360 + 13450 mRNA_5082 0.71 -1.8
1,708,596 + 13450 mRNA_5082 0.79 0.5
1,709,031 + -0.1
1,709,178 + 0.6
1,709,306 + -0.2
1,709,327 - -0.4
1,709,443 - -1.0
1,709,458 - -0.9
1,709,469 - -0.8
1,709,475 + 1.2
1,709,476 + 0.7
1,709,476 + -0.4
1,709,483 + -0.2
1,709,493 + 1.1
1,709,606 - 1.6
1,709,608 - 0.1
1,709,609 - -0.3
1,709,615 + -1.9
1,709,756 - -0.2
1,709,901 - 0.5
1,709,924 + -2.0