Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5041

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5040: 13408 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1615086 to 1617129 13408 mRNA_5041: 13409 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 1617376 to 1619999 13409 mRNA_5042: 13410 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1620186 to 1624463 13410

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,616,385 - 13408 mRNA_5040 0.64 -1.4
1,616,436 + 13408 mRNA_5040 0.66 -0.5
1,616,707 - 13408 mRNA_5040 0.79 0.1
1,616,880 - 13408 mRNA_5040 0.88 -0.2
1,616,988 + -0.3
1,616,997 + -0.2
1,617,139 - 0.3
1,617,139 - -0.8
1,617,139 - 0.8
1,617,165 - 0.5
1,617,293 + -0.1
1,617,299 - -0.1
1,617,305 + -0.3
1,617,313 + 0.4
1,617,314 - -0.2
1,617,327 + 0.0
1,617,333 - 0.3
1,617,334 + -0.6
1,617,438 + 1.2
1,617,474 - 0.5
1,617,600 - 1.3
1,617,641 - 13409 mRNA_5041 0.10 1.4
1,617,718 + 13409 mRNA_5041 0.13 -0.8
1,617,753 - 13409 mRNA_5041 0.14 -0.1
1,617,822 + 13409 mRNA_5041 0.17 -0.1
1,617,900 - 13409 mRNA_5041 0.20 -0.5
1,617,904 - 13409 mRNA_5041 0.20 0.9
1,618,058 + 13409 mRNA_5041 0.26 0.5
1,618,189 + 13409 mRNA_5041 0.31 -0.9
1,618,576 - 13409 mRNA_5041 0.46 0.3
1,618,739 - 13409 mRNA_5041 0.52 -0.3
1,618,887 + 13409 mRNA_5041 0.58 -0.2
1,618,914 - 13409 mRNA_5041 0.59 -0.7
1,619,072 + 13409 mRNA_5041 0.65 -1.3
1,619,333 - 13409 mRNA_5041 0.75 -0.3
1,619,658 + 13409 mRNA_5041 0.87 0.2
1,619,858 + -1.5
1,620,261 - 0.2
1,620,537 - -1.7
1,620,542 + 0.5