Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4954

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1389640 to 1390956 13321 mRNA_4954: 13322 - Hypothetical Protein, at 1391510 to 1392423 13322 mRNA_4955: 13323 - K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9, at 1393172 to 1398147 13323

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,390,704 + 13321 mRNA_4953 0.81 0.3
1,391,075 - -0.9
1,391,145 - 0.1
1,391,149 - -0.8
1,391,151 - 0.5
1,391,157 - 0.7
1,391,158 - 0.3
1,391,164 + 1.5
1,391,169 + -1.2
1,391,203 + -0.5
1,391,267 - 0.4
1,391,276 - 0.3
1,391,285 + -0.2
1,391,291 + 1.8
1,391,291 - -0.1
1,391,304 - 0.2
1,391,310 + 0.5
1,391,313 + 0.1
1,391,314 + -0.0
1,391,332 - 0.3
1,391,334 - -0.4
1,391,334 + -1.0
1,391,335 - -0.4
1,391,335 + -0.6
1,391,336 - 0.2
1,391,343 + 0.1
1,391,344 + -0.2
1,391,368 - -0.2
1,391,385 + 0.4
1,391,395 + -0.4
1,391,399 + -0.6
1,391,401 - 0.4
1,391,405 - -1.1
1,391,414 + -0.0
1,391,414 - -1.2
1,391,414 + -1.0
1,391,416 + 0.0
1,391,420 - -0.5
1,391,426 + -0.5
1,391,429 + -0.2
1,391,430 - -0.4
1,391,431 + -0.7
1,391,432 - 0.9
1,391,432 - 1.2
1,391,437 - 0.3
1,391,442 + -0.1
1,391,452 + -2.1
1,391,452 + -0.5
1,391,452 + -1.0
1,391,454 - 0.7
1,391,457 - 1.0
1,391,458 - -0.7
1,391,467 + 0.1
1,391,472 + -0.3
1,391,493 - -0.5
1,391,511 - -1.0
1,391,515 + -1.4
1,391,545 + 2.0
1,391,588 + -1.1
1,391,596 + 0.7
1,391,609 - 13322 mRNA_4954 0.11 1.5
1,391,617 - 13322 mRNA_4954 0.12 -0.0
1,391,620 + 13322 mRNA_4954 0.12 1.1
1,391,627 + 13322 mRNA_4954 0.13 0.3
1,391,723 - 13322 mRNA_4954 0.23 -0.4
1,391,728 + 13322 mRNA_4954 0.24 -0.3
1,391,739 - 13322 mRNA_4954 0.25 0.4
1,391,744 - 13322 mRNA_4954 0.26 0.0
1,391,750 - 13322 mRNA_4954 0.26 0.7
1,391,751 - 13322 mRNA_4954 0.26 -0.8
1,391,762 - 13322 mRNA_4954 0.28 -0.4
1,391,765 + 13322 mRNA_4954 0.28 -0.8
1,391,774 + 13322 mRNA_4954 0.29 -1.0
1,391,777 - 13322 mRNA_4954 0.29 -0.1
1,391,809 + 13322 mRNA_4954 0.33 -0.2
1,391,833 + 13322 mRNA_4954 0.35 1.7
1,391,838 + 13322 mRNA_4954 0.36 -0.4
1,391,866 + 13322 mRNA_4954 0.39 -0.7
1,391,900 + 13322 mRNA_4954 0.43 1.1
1,391,909 + 13322 mRNA_4954 0.44 -0.8
1,391,965 - 13322 mRNA_4954 0.50 -0.0
1,391,965 - 13322 mRNA_4954 0.50 0.7
1,391,983 - 13322 mRNA_4954 0.52 -0.3
1,392,000 - 13322 mRNA_4954 0.54 -0.6
1,392,016 - 13322 mRNA_4954 0.55 -0.1
1,392,017 - 13322 mRNA_4954 0.55 -1.7
1,392,019 + 13322 mRNA_4954 0.56 -1.7
1,392,019 - 13322 mRNA_4954 0.56 -0.6
1,392,020 - 13322 mRNA_4954 0.56 0.4
1,392,042 - 13322 mRNA_4954 0.58 -0.6
1,392,057 + 13322 mRNA_4954 0.60 0.1
1,392,075 + 13322 mRNA_4954 0.62 -0.2
1,392,090 - 13322 mRNA_4954 0.63 -0.5
1,392,090 + 13322 mRNA_4954 0.63 -1.6
1,392,091 + 13322 mRNA_4954 0.64 -1.0
1,392,094 + 13322 mRNA_4954 0.64 -0.7
1,392,111 + 13322 mRNA_4954 0.66 0.8
1,392,118 + 13322 mRNA_4954 0.67 0.0
1,392,119 + 13322 mRNA_4954 0.67 -0.0
1,392,135 - 13322 mRNA_4954 0.68 0.8
1,392,144 - 13322 mRNA_4954 0.69 1.1
1,392,145 - 13322 mRNA_4954 0.69 0.2
1,392,173 + 13322 mRNA_4954 0.73 0.6
1,392,254 + 13322 mRNA_4954 0.81 0.2
1,392,260 + 13322 mRNA_4954 0.82 0.2
1,392,261 + 13322 mRNA_4954 0.82 0.2
1,392,267 - 13322 mRNA_4954 0.83 1.2
1,392,308 + 13322 mRNA_4954 0.87 -0.1
1,392,309 - 13322 mRNA_4954 0.87 -0.7
1,392,336 + -1.0
1,392,359 - 0.4
1,392,423 - -0.1
1,392,436 - -0.9
1,392,472 - 1.1
1,392,474 + 0.0
1,392,476 - -0.2
1,392,477 + -0.2
1,392,480 - -0.6
1,392,484 + 0.2
1,392,494 + -0.6
1,392,497 - -0.6
1,392,508 - 0.6
1,392,516 + 0.1
1,392,653 + 0.1
1,392,783 - 1.1
1,392,921 + -1.0
1,392,940 + 0.2
1,393,074 + -0.8