Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4953

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4952: 13320 - BLAST Tetratricopeptide-like helical [Xanthophyllomyces den..., at 1387683 to 1389449 13320 mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1389640 to 1390956 13321 mRNA_4954: 13322 - Hypothetical Protein, at 1391510 to 1392423 13322

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,389,066 + 13320 mRNA_4952 0.78 1.2
1,389,179 - 13320 mRNA_4952 0.85 0.1
1,389,182 - 13320 mRNA_4952 0.85 -0.4
1,389,188 + 13320 mRNA_4952 0.85 -1.8
1,389,318 - -0.2
1,389,338 + 0.3
1,389,338 + 0.2
1,389,478 + -1.0
1,389,504 + 0.6
1,389,509 - -0.1
1,389,510 - 1.4
1,389,533 - -1.0
1,389,543 - -0.4
1,389,546 - -0.2
1,389,552 + 1.2
1,389,560 - -0.7
1,389,560 - -0.5
1,389,562 - 0.4
1,389,563 + -0.5
1,389,566 - -1.5
1,389,568 + -0.2
1,389,570 + 0.3
1,389,572 - -0.0
1,389,575 + -0.4
1,389,580 - -0.4
1,389,678 - -0.0
1,389,702 - -1.1
1,389,703 + -0.3
1,389,712 - -0.7
1,389,712 - -0.6
1,389,713 + -0.0
1,389,714 + -0.2
1,389,720 + 1.5
1,389,725 + -0.8
1,389,729 + -0.2
1,389,734 - 0.2
1,389,742 - -1.4
1,389,748 + -0.7
1,389,855 + 13321 mRNA_4953 0.16 0.4
1,389,893 + 13321 mRNA_4953 0.19 0.0
1,390,027 - 13321 mRNA_4953 0.29 0.2
1,390,029 - 13321 mRNA_4953 0.30 0.3
1,390,043 - 13321 mRNA_4953 0.31 -0.4
1,390,175 + 13321 mRNA_4953 0.41 -0.3
1,390,192 + 13321 mRNA_4953 0.42 -0.9
1,390,305 - 13321 mRNA_4953 0.50 -1.1
1,390,419 + 13321 mRNA_4953 0.59 -0.4
1,390,468 - 13321 mRNA_4953 0.63 -0.5
1,390,473 + 13321 mRNA_4953 0.63 1.1
1,390,473 + 13321 mRNA_4953 0.63 -0.8
1,390,704 + 13321 mRNA_4953 0.81 0.3
1,391,075 - -0.9
1,391,145 - 0.1
1,391,149 - -0.8
1,391,151 - 0.5
1,391,157 - 0.7
1,391,158 - 0.3
1,391,164 + 1.5
1,391,169 + -1.2
1,391,203 + -0.5
1,391,267 - 0.4
1,391,276 - 0.3
1,391,285 + -0.2
1,391,291 + 1.8
1,391,291 - -0.1
1,391,304 - 0.2
1,391,310 + 0.5
1,391,313 + 0.1
1,391,314 + -0.0
1,391,332 - 0.3
1,391,334 - -0.4
1,391,334 + -1.0
1,391,335 - -0.4
1,391,335 + -0.6
1,391,336 - 0.2
1,391,343 + 0.1
1,391,344 + -0.2
1,391,368 - -0.2
1,391,385 + 0.4
1,391,395 + -0.4
1,391,399 + -0.6
1,391,401 - 0.4
1,391,405 - -1.1
1,391,414 + -0.0
1,391,414 - -1.2
1,391,414 + -1.0
1,391,416 + 0.0
1,391,420 - -0.5
1,391,426 + -0.5
1,391,429 + -0.2
1,391,430 - -0.4
1,391,431 + -0.7
1,391,432 - 0.9
1,391,432 - 1.2
1,391,437 - 0.3
1,391,442 + -0.1
1,391,452 + -2.1
1,391,452 + -0.5
1,391,452 + -1.0
1,391,454 - 0.7
1,391,457 - 1.0
1,391,458 - -0.7
1,391,467 + 0.1
1,391,472 + -0.3
1,391,493 - -0.5
1,391,511 - -1.0
1,391,515 + -1.4
1,391,545 + 2.0
1,391,588 + -1.1
1,391,596 + 0.7
1,391,609 - 13322 mRNA_4954 0.11 1.5
1,391,617 - 13322 mRNA_4954 0.12 -0.0
1,391,620 + 13322 mRNA_4954 0.12 1.1
1,391,627 + 13322 mRNA_4954 0.13 0.3
1,391,723 - 13322 mRNA_4954 0.23 -0.4
1,391,728 + 13322 mRNA_4954 0.24 -0.3
1,391,739 - 13322 mRNA_4954 0.25 0.4
1,391,744 - 13322 mRNA_4954 0.26 0.0
1,391,750 - 13322 mRNA_4954 0.26 0.7
1,391,751 - 13322 mRNA_4954 0.26 -0.8
1,391,762 - 13322 mRNA_4954 0.28 -0.4
1,391,765 + 13322 mRNA_4954 0.28 -0.8
1,391,774 + 13322 mRNA_4954 0.29 -1.0
1,391,777 - 13322 mRNA_4954 0.29 -0.1
1,391,809 + 13322 mRNA_4954 0.33 -0.2
1,391,833 + 13322 mRNA_4954 0.35 1.7
1,391,838 + 13322 mRNA_4954 0.36 -0.4
1,391,866 + 13322 mRNA_4954 0.39 -0.7
1,391,900 + 13322 mRNA_4954 0.43 1.1
1,391,909 + 13322 mRNA_4954 0.44 -0.8