Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4848

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4847: 13215 - Hypothetical Protein, at 1133572 to 1137413 13215 mRNA_4848: 13216 - Hypothetical Protein, at 1137464 to 1141122 13216 mRNA_4849: 13217 - HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176, at 1141315 to 1143566 13217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,136,914 + 13215 mRNA_4847 0.87 0.2
1,136,914 + 13215 mRNA_4847 0.87 -0.6
1,136,917 + 13215 mRNA_4847 0.87 -0.4
1,137,042 - 0.7
1,137,058 + -0.2
1,137,072 - -0.2
1,137,087 + -0.6
1,137,158 + -0.6
1,137,196 - 0.2
1,137,204 + -0.9
1,137,215 + -0.7
1,137,235 + 0.6
1,137,336 - -2.4
1,137,347 - -1.0
1,137,533 + -0.1
1,137,632 - 0.3
1,137,903 - 13216 mRNA_4848 0.12 -0.9
1,137,920 - 13216 mRNA_4848 0.12 0.0
1,137,925 + 13216 mRNA_4848 0.13 -1.0
1,138,065 - 13216 mRNA_4848 0.16 -0.9
1,138,077 + 13216 mRNA_4848 0.17 -0.1
1,138,083 - 13216 mRNA_4848 0.17 -0.4
1,138,165 + 13216 mRNA_4848 0.19 -1.2
1,138,165 - 13216 mRNA_4848 0.19 -0.6
1,138,231 + 13216 mRNA_4848 0.21 0.8
1,138,350 + 13216 mRNA_4848 0.24 -1.4
1,138,513 - 13216 mRNA_4848 0.29 0.2
1,138,513 + 13216 mRNA_4848 0.29 -0.5
1,138,646 + 13216 mRNA_4848 0.32 -1.1
1,139,098 - 13216 mRNA_4848 0.45 0.5
1,139,112 + 13216 mRNA_4848 0.45 -1.9
1,139,220 - 13216 mRNA_4848 0.48 0.4
1,139,269 + 13216 mRNA_4848 0.49 -1.4
1,139,436 + 13216 mRNA_4848 0.54 0.9
1,139,439 - 13216 mRNA_4848 0.54 -0.6
1,139,460 - 13216 mRNA_4848 0.55 0.0
1,139,508 - 13216 mRNA_4848 0.56 -0.7
1,139,685 + 13216 mRNA_4848 0.61 -1.0
1,139,702 + 13216 mRNA_4848 0.61 0.4
1,139,714 - 13216 mRNA_4848 0.61 -0.8
1,139,856 - 13216 mRNA_4848 0.65 -0.1
1,139,857 + 13216 mRNA_4848 0.65 -0.3
1,139,861 + 13216 mRNA_4848 0.66 -1.1
1,140,135 - 13216 mRNA_4848 0.73 0.3
1,140,235 + 13216 mRNA_4848 0.76 1.4
1,140,243 + 13216 mRNA_4848 0.76 0.7
1,140,357 - 13216 mRNA_4848 0.79 -0.2
1,140,542 + 13216 mRNA_4848 0.84 -0.3
1,140,584 - 13216 mRNA_4848 0.85 0.1
1,140,968 - -0.5
1,140,975 - -0.8
1,140,998 - -0.1
1,141,117 + -0.4
1,142,008 + 13217 mRNA_4849 0.31 -1.9