Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4753

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121 mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931606 to 933249 13122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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926,672 - 13120 mRNA_4752 0.85 -1.8
926,822 + 13120 mRNA_4752 0.89 -1.2
926,841 + 13120 mRNA_4752 0.89 0.7
926,930 - -2.1
926,936 - -0.4
927,146 + -0.3
927,225 - -0.1
927,384 - -0.0
927,687 + 0.2
928,093 + 13121 mRNA_4753 0.15 1.5
928,145 - 13121 mRNA_4753 0.16 -1.0
928,208 - 13121 mRNA_4753 0.18 -0.5
928,215 + 13121 mRNA_4753 0.18 -1.3
928,365 - 13121 mRNA_4753 0.22 0.1
928,367 + 13121 mRNA_4753 0.23 -0.8
928,725 + 13121 mRNA_4753 0.33 0.1
928,810 - 13121 mRNA_4753 0.35 -0.5
928,834 - 13121 mRNA_4753 0.36 -0.7
928,937 - 13121 mRNA_4753 0.39 -1.2
928,963 - 13121 mRNA_4753 0.40 0.1
929,143 + 13121 mRNA_4753 0.45 -2.0
929,262 - 13121 mRNA_4753 0.48 0.5
929,577 - 13121 mRNA_4753 0.57 -1.1
929,821 - 13121 mRNA_4753 0.64 0.8
929,827 + 13121 mRNA_4753 0.65 0.2
929,830 - 13121 mRNA_4753 0.65 -1.1
929,841 + 13121 mRNA_4753 0.65 -0.6
929,850 - 13121 mRNA_4753 0.65 -0.3
929,884 + 13121 mRNA_4753 0.66 -0.1
930,106 - 13121 mRNA_4753 0.73 1.1
930,118 - 13121 mRNA_4753 0.73 0.9
930,118 + 13121 mRNA_4753 0.73 0.8
930,303 + 13121 mRNA_4753 0.78 -0.2
930,308 - 13121 mRNA_4753 0.78 0.0
930,429 - 13121 mRNA_4753 0.82 -0.3
930,441 - 13121 mRNA_4753 0.82 -0.7
930,493 - 13121 mRNA_4753 0.84 -0.2
930,568 - 13121 mRNA_4753 0.86 0.0
930,593 + 13121 mRNA_4753 0.87 0.3
930,908 + 0.1
931,011 - -0.2
931,024 + -0.3
931,031 - 0.7
931,036 - -0.2
931,051 + -0.0
931,202 + -0.2
931,204 - 0.6
931,211 + 0.4
931,214 - -0.6
931,336 + 0.1
931,336 + -0.7
931,342 - -1.2
931,343 - -0.9
931,347 + 1.1
931,357 - 0.0
931,359 - -0.9
931,360 - -0.9
931,360 + 0.0
931,361 - -0.0
931,367 - -0.2
931,376 + -0.4
931,376 + -0.3
931,379 + 0.3
931,386 - -1.3
931,413 + 0.6
931,508 - -0.6
931,524 + -0.4
931,540 - -1.4
931,680 - -0.5
931,801 - 13122 mRNA_4754 0.12 0.1
931,806 - 13122 mRNA_4754 0.12 -0.1
931,813 + 13122 mRNA_4754 0.13 0.2
931,881 - 13122 mRNA_4754 0.17 -0.6
931,955 - 13122 mRNA_4754 0.21 0.6
931,989 + 13122 mRNA_4754 0.23 0.9
931,990 - 13122 mRNA_4754 0.23 0.2
932,016 + 13122 mRNA_4754 0.25 1.1