Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4737

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888664 to 889665 13104 mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889765 to 891262 13105 mRNA_4738: 13106 - K01738 cysK cysteine synthase A, at 891331 to 893508 13106

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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888,817 - 13104 mRNA_4736 0.15 -0.5
889,039 + 13104 mRNA_4736 0.37 -1.8
889,192 - 13104 mRNA_4736 0.53 -0.1
889,282 - 13104 mRNA_4736 0.62 0.6
889,296 + 13104 mRNA_4736 0.63 -1.2
889,297 - 13104 mRNA_4736 0.63 0.8
889,301 - 13104 mRNA_4736 0.64 -0.5
889,319 + 13104 mRNA_4736 0.65 -1.2
889,440 + 13104 mRNA_4736 0.77 -0.1
889,564 - 13104 mRNA_4736 0.90 -1.0
889,586 - 0.1
889,602 - 0.1
889,696 + -0.2
889,703 + 0.9
889,723 + -1.6
889,731 + -0.9
889,738 + -1.2
889,747 + -0.8
889,750 - -0.7
889,751 + -1.6
889,828 + 1.0
889,892 - 0.2
889,920 + 13105 mRNA_4737 0.10 -0.1
889,926 + 13105 mRNA_4737 0.11 -1.1
889,929 - 13105 mRNA_4737 0.11 -0.9
890,026 + 13105 mRNA_4737 0.17 -0.3
890,056 + 13105 mRNA_4737 0.19 -2.8
890,160 + 13105 mRNA_4737 0.26 -0.4
890,323 - 13105 mRNA_4737 0.37 0.2
890,357 - 13105 mRNA_4737 0.40 -0.7
890,467 + 13105 mRNA_4737 0.47 0.2
890,483 + 13105 mRNA_4737 0.48 0.2
890,494 + 13105 mRNA_4737 0.49 -0.1
890,754 - 13105 mRNA_4737 0.66 -1.0
890,755 - 13105 mRNA_4737 0.66 0.3
890,762 + 13105 mRNA_4737 0.67 -0.2
890,921 - 13105 mRNA_4737 0.77 -0.4
891,485 - -0.5
891,512 - -0.5
891,513 + -0.0
891,513 + -0.7
891,682 - 13106 mRNA_4738 0.16 0.1
891,683 + 13106 mRNA_4738 0.16 -0.3
891,698 + 13106 mRNA_4738 0.17 -0.6
891,775 + 13106 mRNA_4738 0.20 1.4
891,792 + 13106 mRNA_4738 0.21 0.8
891,826 + 13106 mRNA_4738 0.23 -1.1
892,050 - 13106 mRNA_4738 0.33 -0.4
892,060 - 13106 mRNA_4738 0.33 -0.5
892,074 - 13106 mRNA_4738 0.34 -1.4
892,090 + 13106 mRNA_4738 0.35 -0.6
892,202 - 13106 mRNA_4738 0.40 -0.2