Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4727

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866956 to 867873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868153 to 868831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868902 to 870638 13096

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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867,156 + 13094 mRNA_4726 0.22 -0.7
867,434 + 13094 mRNA_4726 0.52 0.1
867,445 - 13094 mRNA_4726 0.53 -1.3
867,448 + 13094 mRNA_4726 0.54 0.3
867,468 + 13094 mRNA_4726 0.56 0.6
867,554 - 13094 mRNA_4726 0.65 -0.5
867,867 - 0.5
867,880 - -0.2
867,923 - -2.2
868,012 - -0.4
868,303 + 13095 mRNA_4727 0.22 -0.5
868,448 + 13095 mRNA_4727 0.43 0.7
868,595 + 13095 mRNA_4727 0.65 0.9
868,598 + 13095 mRNA_4727 0.66 -1.8
868,608 - 13095 mRNA_4727 0.67 -0.6
868,615 - 13095 mRNA_4727 0.68 -0.6
868,719 - 13095 mRNA_4727 0.83 -0.2
868,727 - 13095 mRNA_4727 0.85 2.2
868,799 + -0.8
868,864 - -1.5
868,873 - -0.7
868,885 + 1.4
869,138 - 13096 mRNA_4728 0.14 -0.1
869,611 - 13096 mRNA_4728 0.41 1.0
869,768 - 13096 mRNA_4728 0.50 -0.3