Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4718

Experiments: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844086 to 846101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849310 to 850936 13087

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
846,034 + -0.5
846,037 - -1.0
846,048 + -1.7
846,250 - 0.2
846,365 - -0.5
846,479 - -1.0
846,495 + -0.6
846,513 + -0.5
846,598 - 0.4
846,617 + -0.7
846,627 - -0.6
846,630 - -0.8
846,645 + 0.1
846,649 + -0.2
846,660 + 0.5
846,782 - 0.4
846,785 - 0.3
846,794 - -0.3
846,812 - 0.5
846,919 - 0.1
847,070 - -0.3
847,094 - -0.3
847,485 + 13086 mRNA_4718 0.26 1.4
847,488 - 13086 mRNA_4718 0.26 0.7
847,497 + 13086 mRNA_4718 0.27 -0.1
847,916 - 13086 mRNA_4718 0.47 0.2
848,048 + 13086 mRNA_4718 0.53 -0.2
848,155 - 13086 mRNA_4718 0.58 0.4
848,239 + 13086 mRNA_4718 0.62 1.4
848,387 + 13086 mRNA_4718 0.69 -0.1
848,394 - 13086 mRNA_4718 0.70 -0.1
848,397 - 13086 mRNA_4718 0.70 -0.2
848,954 - 0.1
848,954 - 0.6
849,097 - -0.8
849,256 - -0.9
849,260 + -0.7
849,275 + 1.4
849,279 - 0.3
849,280 - 0.0
849,367 + -0.3
849,381 + 1.0
849,401 - -0.2
849,404 - 0.1
849,431 - -0.2
849,434 + 0.2
849,570 - 13087 mRNA_4719 0.16 -0.9
849,598 + 13087 mRNA_4719 0.18 -0.7
849,621 + 13087 mRNA_4719 0.19 2.1
849,702 - 13087 mRNA_4719 0.24 -1.1
849,743 - 13087 mRNA_4719 0.27 -0.2
849,802 + 13087 mRNA_4719 0.30 -0.2
849,822 - 13087 mRNA_4719 0.31 0.6
849,826 + 13087 mRNA_4719 0.32 -1.3
850,012 + 13087 mRNA_4719 0.43 -0.8