Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4477

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4476: 12844 - HMMPfam-Domain of unknown function (DUF543)-PF04418, at 274456 to 275559 12844 mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276130 to 277462 12845 mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277974 to 281759 12846

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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275,150 + 12844 mRNA_4476 0.63 -0.3
275,430 + 12844 mRNA_4476 0.88 0.2
275,440 - 12844 mRNA_4476 0.89 0.5
275,544 - 0.0
275,593 + -0.5
275,601 + 0.5
275,601 - 0.5
275,920 - 0.1
276,563 - 12845 mRNA_4477 0.32 -0.6
276,739 + 12845 mRNA_4477 0.46 -0.2
276,868 - 12845 mRNA_4477 0.55 -1.8
277,455 + -1.6
277,503 - -0.4
277,589 - 0.2
277,621 - 0.3
277,633 - 0.5
277,636 - 0.8
277,643 - -1.9
277,700 + 0.9
277,702 + -0.1
277,702 + 0.2
277,957 - -0.1
278,259 + 0.4