Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4456

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226736 to 228552 12823 mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228673 to 230476 12824 mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231158 to 232825 12825

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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227,708 - 12823 mRNA_4455 0.53 1.1
227,801 - 12823 mRNA_4455 0.59 -0.5
227,960 - 12823 mRNA_4455 0.67 0.3
228,309 + 12823 mRNA_4455 0.87 -0.2
228,428 - 1.4
228,431 - -0.2
228,586 + 0.5
228,589 + -0.2
228,594 - 0.1
228,595 - -0.1
228,598 - 0.7
228,613 + 0.5
228,621 - 1.1
228,621 - 0.6
228,720 + -0.4
228,735 - -0.4
228,740 - -0.7
228,898 - 12824 mRNA_4456 0.12 0.3
228,914 + 12824 mRNA_4456 0.13 -0.1
228,922 + 12824 mRNA_4456 0.14 0.2
228,936 - 12824 mRNA_4456 0.15 -0.5
228,974 - 12824 mRNA_4456 0.17 0.4
229,027 + 12824 mRNA_4456 0.20 0.0
229,028 - 12824 mRNA_4456 0.20 -1.1
229,056 + 12824 mRNA_4456 0.21 -0.2
229,067 - 12824 mRNA_4456 0.22 -0.6
229,070 - 12824 mRNA_4456 0.22 -1.5
229,071 + 12824 mRNA_4456 0.22 0.2
229,121 + 12824 mRNA_4456 0.25 0.1
229,197 - 12824 mRNA_4456 0.29 -0.8
229,211 - 12824 mRNA_4456 0.30 0.8
229,228 - 12824 mRNA_4456 0.31 -1.2
229,229 + 12824 mRNA_4456 0.31 -0.4
229,235 + 12824 mRNA_4456 0.31 -0.6
229,237 - 12824 mRNA_4456 0.31 -0.8
229,333 - 12824 mRNA_4456 0.37 -0.2
229,335 + 12824 mRNA_4456 0.37 0.3
229,822 + 12824 mRNA_4456 0.64 -0.1
229,944 + 12824 mRNA_4456 0.70 -1.1
230,067 - 12824 mRNA_4456 0.77 0.3
230,217 + 12824 mRNA_4456 0.86 0.2
230,227 + 12824 mRNA_4456 0.86 -0.1
230,485 - 0.3
230,501 + 0.0
230,512 - -0.7
230,533 - 0.8
230,621 + 0.1
230,627 - -0.4
230,742 - 0.2
230,767 - 0.1
230,769 - -0.3
230,769 + 0.8
230,873 + 0.1
230,881 + -1.4
230,881 - -0.1
230,881 + 1.2
230,889 - -0.2
230,897 - -1.0
230,910 + -0.0
230,919 - 0.4
230,920 - 1.0
230,956 - -1.0
230,966 - -0.4
230,966 + 0.2
230,970 - -0.1
230,974 - -0.8
230,982 - -0.4
230,995 - 0.1
231,009 - 2.1
231,012 - -0.7
231,031 + 0.3
231,061 + -1.0
231,275 + -0.6
231,402 + 12825 mRNA_4457 0.15 0.8