Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4446

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197325 to 199939 12813 mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200196 to 203838 12814 mRNA_4447: 12815 - K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I), at 204059 to 206130 12815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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199,375 - 12813 mRNA_4445 0.78 -0.1
199,380 - 12813 mRNA_4445 0.79 -0.1
199,632 + 12813 mRNA_4445 0.88 -2.0
200,224 - -0.3
200,296 - -0.3
200,365 + 0.9
200,621 + 12814 mRNA_4446 0.12 -1.2
200,657 + 12814 mRNA_4446 0.13 -1.0
200,675 + 12814 mRNA_4446 0.13 -0.1
201,000 + 12814 mRNA_4446 0.22 -0.7
201,073 + 12814 mRNA_4446 0.24 1.0
201,200 + 12814 mRNA_4446 0.28 -0.4
201,242 + 12814 mRNA_4446 0.29 -0.3
201,300 + 12814 mRNA_4446 0.30 -0.6
201,507 + 12814 mRNA_4446 0.36 -0.0
201,509 - 12814 mRNA_4446 0.36 -0.6
201,662 + 12814 mRNA_4446 0.40 -0.8
201,823 + 12814 mRNA_4446 0.45 -0.4
201,867 + 12814 mRNA_4446 0.46 -0.6
202,079 - 12814 mRNA_4446 0.52 0.6
202,201 - 12814 mRNA_4446 0.55 -0.5
202,223 - 12814 mRNA_4446 0.56 0.2
202,431 - 12814 mRNA_4446 0.61 -1.0
202,564 + 12814 mRNA_4446 0.65 -1.5
202,772 - 12814 mRNA_4446 0.71 0.1
203,097 + 12814 mRNA_4446 0.80 0.2
203,393 - 12814 mRNA_4446 0.88 -0.0
203,431 + 12814 mRNA_4446 0.89 0.6
203,464 - 12814 mRNA_4446 0.90 -0.1
203,531 - 1.4
203,567 + -0.8
203,572 - -2.7
203,700 - 0.5
203,704 - 0.7
203,707 + -0.5
203,710 + 0.7
203,711 - 0.1
203,728 + 0.4
203,736 + -1.2
203,856 - 0.0
203,857 + -1.9
203,865 + 0.3
203,893 + -0.5
203,893 - 0.3
204,457 + 12815 mRNA_4447 0.19 1.7
204,836 - 12815 mRNA_4447 0.38 -1.3