Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4378

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4377: 12745 - Hypothetical Protein, at 52516 to 53498 12745 mRNA_4378: 12746 - KOG2432 Uncharacterized conserved protein, at 53641 to 56318 12746 mRNA_4379: 12747 - KOG4359 Protein kinase C inhibitor-like protein, at 56702 to 58135 12747

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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52,849 + 12745 mRNA_4377 0.34 -0.5
52,852 - 12745 mRNA_4377 0.34 0.1
52,854 + 12745 mRNA_4377 0.34 -1.6
52,956 + 12745 mRNA_4377 0.45 0.4
53,093 - 12745 mRNA_4377 0.59 -0.6
53,387 + 12745 mRNA_4377 0.89 -0.7
53,449 + -0.1
53,487 + 1.4
53,556 + 1.0
53,584 - 0.4
53,585 + 1.7
53,708 - -1.3
53,716 + 1.1
53,730 - -0.8
53,733 + -2.0
53,866 + -1.1
53,924 + 12746 mRNA_4378 0.11 -3.1
54,053 - 12746 mRNA_4378 0.15 -0.4
54,161 + 12746 mRNA_4378 0.19 0.9
54,174 - 12746 mRNA_4378 0.20 0.2
54,343 + 12746 mRNA_4378 0.26 -0.7
54,468 - 12746 mRNA_4378 0.31 -1.0
55,098 + 12746 mRNA_4378 0.54 -0.6
55,117 + 12746 mRNA_4378 0.55 0.2
55,147 + 12746 mRNA_4378 0.56 0.5
55,148 - 12746 mRNA_4378 0.56 -0.3
55,155 + 12746 mRNA_4378 0.57 1.5
55,326 - 12746 mRNA_4378 0.63 0.2
55,467 - 12746 mRNA_4378 0.68 0.0
55,679 + 12746 mRNA_4378 0.76 -2.8
56,203 - 1.3
56,235 + -0.7
56,332 + -0.3
56,506 + -0.8
56,644 + -1.1
56,654 - -0.1
56,739 + 0.1
56,801 + 0.4
56,932 - 12747 mRNA_4379 0.16 0.8
56,940 - 12747 mRNA_4379 0.17 -0.3
56,949 - 12747 mRNA_4379 0.17 0.8
56,949 + 12747 mRNA_4379 0.17 0.2
56,950 + 12747 mRNA_4379 0.17 0.2
56,959 + 12747 mRNA_4379 0.18 0.3
57,075 + 12747 mRNA_4379 0.26 -1.0
57,226 - 12747 mRNA_4379 0.37 0.3
57,228 - 12747 mRNA_4379 0.37 1.1
57,231 - 12747 mRNA_4379 0.37 1.0