Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4375

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743 mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49826 to 51100 12744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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45,445 + 12742 mRNA_4374 0.80 -1.3
45,452 - 12742 mRNA_4374 0.80 -1.2
45,462 + 12742 mRNA_4374 0.80 1.0
45,471 - 12742 mRNA_4374 0.81 1.0
45,741 - 12742 mRNA_4374 0.90 -0.2
45,744 - -1.4
45,744 + 0.4
45,773 + -0.9
45,906 + -2.5
45,912 - 0.2
45,918 - 0.8
45,996 - -1.0
46,018 + -0.2
46,034 - 0.2
46,055 - -0.3
46,059 + -0.4
46,060 + 0.1
46,074 + -0.7
46,155 - 1.0
46,186 + -1.0
46,189 - -0.2
46,191 + -0.1
46,192 + 0.1
46,195 - 0.1
46,201 + 0.0
46,202 + 0.3
46,203 - -2.1
46,205 + -0.8
46,208 - -0.5
46,208 - 0.0
46,217 + -0.8
46,217 + -0.2
46,219 - -0.4
46,227 - 0.8
46,230 + -0.6
46,233 + -0.4
46,235 + 0.1
46,237 - 0.8
46,237 + 0.6
46,287 + -0.5
46,334 + -0.4
46,342 - -0.2
46,346 + -1.3
46,355 + -0.5
46,355 - 0.7
46,367 + 0.5
46,367 + -1.2
46,367 - -1.4
46,368 - 0.1
46,369 - -1.0
46,383 - -0.3
46,384 + 0.1
46,387 + -1.4
46,623 - 0.3
46,759 + 12743 mRNA_4375 0.13 0.5
46,940 - 12743 mRNA_4375 0.19 0.6
46,947 - 12743 mRNA_4375 0.20 -0.0
46,956 + 12743 mRNA_4375 0.20 0.0
46,976 + 12743 mRNA_4375 0.21 -1.0
47,119 + 12743 mRNA_4375 0.25 -0.1
47,155 - 12743 mRNA_4375 0.26 -0.8
47,579 + 12743 mRNA_4375 0.40 -0.8
47,664 + 12743 mRNA_4375 0.43 -0.1
47,758 + 12743 mRNA_4375 0.46 1.0
47,837 - 12743 mRNA_4375 0.49 0.5
47,956 + 12743 mRNA_4375 0.53 0.3
48,013 + 12743 mRNA_4375 0.55 1.0
48,024 - 12743 mRNA_4375 0.55 -0.4
48,445 + 12743 mRNA_4375 0.69 -0.2
48,715 - 12743 mRNA_4375 0.78 -1.2
48,716 - 12743 mRNA_4375 0.78 -0.9
48,905 + 12743 mRNA_4375 0.84 -0.5
49,014 + 12743 mRNA_4375 0.87 0.9
49,028 - 12743 mRNA_4375 0.88 0.4
49,176 + 1.0
49,334 - 0.5
49,348 + 0.7
49,351 - -1.1
49,397 - 0.1
49,415 - -0.4
49,433 - 1.5
49,446 - 0.2
49,628 - -0.3
49,747 - -0.3
49,901 + -1.4
50,136 + 12744 mRNA_4376 0.24 -0.6
50,139 - 12744 mRNA_4376 0.25 -0.7