Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4344

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4343: 12711 - K15206 TFC7 transcription factor C subunit 7, at 1955743 to 1957166 12711 mRNA_4344: 12712 - HMMPfam-Secretory lipase-PF03583,SUPERFAMILY--SSF53474, at 1957687 to 1959260 12712 mRNA_4345: 12713 - K04706 PIAS1 E3 SUMO-protein ligase PIAS1, at 1959851 to 1962070 12713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,956,876 + 12711 mRNA_4343 0.80 0.4
1,956,879 - 12711 mRNA_4343 0.80 -0.2
1,956,923 + 12711 mRNA_4343 0.83 -1.8
1,957,051 - -0.5
1,957,079 + -0.8
1,957,088 - -1.5
1,957,162 + -1.9
1,957,163 - -0.1
1,957,185 + -0.1
1,957,219 - -1.1
1,957,361 + -0.1
1,957,481 + -1.3
1,957,531 + 1.2
1,957,670 - -0.3
1,957,681 - -0.8
1,957,826 + -0.2
1,957,946 - 12712 mRNA_4344 0.16 1.3
1,957,952 - 12712 mRNA_4344 0.17 -2.0
1,957,953 + 12712 mRNA_4344 0.17 0.2
1,957,993 + 12712 mRNA_4344 0.19 0.7
1,958,068 - 12712 mRNA_4344 0.24 0.0
1,958,111 - 12712 mRNA_4344 0.27 -1.0
1,958,228 - 12712 mRNA_4344 0.34 0.2
1,958,334 - 12712 mRNA_4344 0.41 -0.6
1,958,351 - 12712 mRNA_4344 0.42 -0.3
1,958,374 - 12712 mRNA_4344 0.44 -0.2
1,958,380 - 12712 mRNA_4344 0.44 -0.6
1,958,435 + 12712 mRNA_4344 0.48 -1.0
1,958,766 + 12712 mRNA_4344 0.69 -0.5
1,958,980 - 12712 mRNA_4344 0.82 0.7
1,959,342 - -1.3
1,959,382 - -0.3
1,959,391 - -0.8
1,959,396 + 0.4
1,959,417 - -0.6
1,959,430 - -0.1
1,959,431 + -0.4
1,959,436 - -3.3
1,959,444 - -0.7
1,959,446 - 1.2
1,959,447 + 0.1
1,959,457 - -0.0
1,959,471 + -1.5
1,959,475 - -1.9
1,959,538 + -0.5
1,959,557 + -0.4
1,959,568 + 0.6
1,959,568 + 0.9
1,959,569 - 0.8
1,959,570 - 0.7
1,959,578 + -2.3
1,959,581 - 0.3
1,959,591 + 1.4
1,959,598 + 0.2
1,959,600 + -0.9
1,959,633 + -0.1
1,959,651 - 1.2
1,959,685 + -0.5
1,959,685 + 0.8
1,959,716 - -0.4
1,959,730 + -0.1
1,959,773 + 0.5
1,959,790 - -0.0
1,959,797 + -0.5
1,960,027 + -0.1
1,960,032 + -0.9
1,960,037 + -1.3
1,960,188 - 12713 mRNA_4345 0.15 -1.0
1,960,200 - 12713 mRNA_4345 0.16 0.8