Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4342

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4341: 12709 - K08266 MLST8, GBL target of rapamycin complex subunit LST8, at 1949173 to 1951155 12709 mRNA_4342: 12710 - K08801 PASK PAS domain containing serine/threonine kinase, at 1951654 to 1955244 12710 mRNA_4343: 12711 - K15206 TFC7 transcription factor C subunit 7, at 1955743 to 1957166 12711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,951,205 - -0.5
1,951,214 + -0.6
1,951,226 - 0.1
1,951,348 + 0.5
1,951,357 - 0.1
1,951,379 - -1.5
1,951,515 - 0.6
1,951,518 + -1.9
1,951,659 - -0.6
1,951,661 + 0.8
1,951,793 - -0.0
1,951,911 + -0.2
1,951,943 - -0.1
1,951,964 - -0.3
1,952,058 - 12710 mRNA_4342 0.11 -1.7
1,952,404 - 12710 mRNA_4342 0.21 0.2
1,952,537 - 12710 mRNA_4342 0.25 0.9
1,952,689 - 12710 mRNA_4342 0.29 1.9
1,952,987 - 12710 mRNA_4342 0.37 1.2
1,952,987 - 12710 mRNA_4342 0.37 0.2
1,953,147 - 12710 mRNA_4342 0.42 0.4
1,953,298 - 12710 mRNA_4342 0.46 -1.2
1,953,310 + 12710 mRNA_4342 0.46 1.1
1,953,310 + 12710 mRNA_4342 0.46 -0.1
1,953,408 + 12710 mRNA_4342 0.49 0.4
1,953,555 + 12710 mRNA_4342 0.53 1.0
1,954,122 + 12710 mRNA_4342 0.69 1.2
1,954,144 + 12710 mRNA_4342 0.69 -1.0
1,954,288 + 12710 mRNA_4342 0.73 0.1
1,954,301 - 12710 mRNA_4342 0.74 -1.9
1,955,005 + 0.1
1,955,006 - 1.4
1,955,035 + 0.0
1,955,160 - -0.9
1,955,166 + -0.3
1,955,306 - -0.6
1,955,320 + 0.1
1,955,337 - -0.1
1,955,366 + -0.7
1,955,464 + -0.4
1,955,481 + 0.0
1,955,488 + 0.2
1,955,621 + -1.2
1,955,636 - 0.2
1,955,730 + -2.3
1,955,765 - 0.0
1,956,190 + 12711 mRNA_4343 0.31 1.1