Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4330

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4329: 12697 - KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1), at 1921131 to 1925118 12697 mRNA_4330: 12698 - K18738 HEK2, KHD1 heterogeneous nuclear rnp K-like protein 2, at 1925709 to 1927416 12698 mRNA_4331: 12699 - K15262 BCP1, BCCIP protein BCP1, at 1927638 to 1928975 12699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,925,054 + -1.4
1,925,074 - 0.7
1,925,212 + 1.8
1,925,219 + -0.8
1,925,347 + -0.6
1,925,357 + -0.6
1,925,477 + 0.3
1,926,151 - 12698 mRNA_4330 0.26 1.2
1,926,479 - 12698 mRNA_4330 0.45 0.3
1,926,479 - 12698 mRNA_4330 0.45 0.8
1,926,591 + 12698 mRNA_4330 0.52 0.9
1,927,027 + 12698 mRNA_4330 0.77 -0.8
1,927,064 - 12698 mRNA_4330 0.79 0.7
1,927,189 - 12698 mRNA_4330 0.87 -1.2
1,927,190 + 12698 mRNA_4330 0.87 -0.3
1,927,495 - 1.2
1,927,515 - -0.4
1,927,520 + -0.3
1,927,583 + 0.7