Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4240

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4239: 12607 - Hypothetical Protein, at 1691409 to 1692539 12607 mRNA_4240: 12608 - KOG1700 Regulatory protein MLP and related LIM proteins, at 1692949 to 1695625 12608 mRNA_4241: 12609 - Hypothetical Protein, at 1696201 to 1696797 12609

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,692,026 - 12607 mRNA_4239 0.55 0.1
1,692,027 + 12607 mRNA_4239 0.55 -0.1
1,692,031 - 12607 mRNA_4239 0.55 -0.5
1,692,108 + 12607 mRNA_4239 0.62 0.0
1,692,124 - 12607 mRNA_4239 0.63 -0.3
1,692,126 + 12607 mRNA_4239 0.63 1.0
1,692,189 - 12607 mRNA_4239 0.69 -0.1
1,692,242 - 12607 mRNA_4239 0.74 0.3
1,692,331 + 12607 mRNA_4239 0.82 1.8
1,692,480 - -1.1
1,692,568 + 1.0
1,692,579 - -0.9
1,692,612 - -1.1
1,692,737 + -0.8
1,692,878 + 0.4
1,693,023 - -0.0
1,693,029 - -1.0
1,693,045 - 0.5
1,693,054 + -1.4
1,693,077 - 0.3
1,693,614 + 12608 mRNA_4240 0.25 0.5
1,693,931 - 12608 mRNA_4240 0.37 -0.9
1,694,378 + 12608 mRNA_4240 0.53 -2.1
1,694,514 - 12608 mRNA_4240 0.58 0.7
1,694,518 + 12608 mRNA_4240 0.59 -0.6
1,694,538 + 12608 mRNA_4240 0.59 0.2
1,694,957 + 12608 mRNA_4240 0.75 0.2
1,695,065 - 12608 mRNA_4240 0.79 0.3
1,695,122 + 12608 mRNA_4240 0.81 0.1
1,695,266 + 12608 mRNA_4240 0.87 -0.2
1,695,271 + 12608 mRNA_4240 0.87 -0.7
1,695,312 + 12608 mRNA_4240 0.88 0.1
1,695,491 + -0.2
1,695,496 - -0.0
1,695,532 + -0.1
1,695,535 - -0.5
1,695,684 + 0.5
1,695,803 + -0.2
1,695,849 - -0.1
1,695,982 - -0.7
1,696,074 + 0.5
1,696,113 - -0.2
1,696,392 - 12609 mRNA_4241 0.32 0.8
1,696,408 - 12609 mRNA_4241 0.35 0.0
1,696,408 + 12609 mRNA_4241 0.35 0.5
1,696,429 + 12609 mRNA_4241 0.38 0.5
1,696,526 + 12609 mRNA_4241 0.54 -0.8
1,696,547 + 12609 mRNA_4241 0.58 0.6
1,696,558 - 12609 mRNA_4241 0.60 -0.4
1,696,598 + 12609 mRNA_4241 0.66 0.5